Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0945 ATGGAGCTCCGAATCCAAGCTCTGCTTCTCTCCGTATTCCTTGCCGCCATTTCAGCAGCCGCCATCTCCCCTGGTTCTACCCTCTTTGCTTCCAACACAAACCAAACATGGTCATCTCCCCAGAAAACATTCTCTCTGCACTTCGTTCCCGCCGATCCCCAAACTTCTCCTCCTTCCTTCATCGCCGCCATCGTCTACGCCGGCGACACACCCATCATATGGTCCGCTGGTAACGGCTCCTCCGTGGACTCTGGCGGCTCATTCCAGTTCCTCTCCACCGGCAGCCTACGCCTCGTTAATGGGTCCGGCTCCACCGTGTGGGATTCCGGAACTTCCAATCTGAATGTATCCTCCGCCTCCCTACAAGACGATGGGAACCTCGTTCTCTCGAATAGCACCCGCACCGTCTGGTCAACGTTCGACCATCCCACTGATACGATTGTGCCGTCTCAGAACTTCACTACCAATAAGGTTTTGCTATCTGGCTTGTATTCATTTAACTTTCTTTCGAGTGGAAATTTGACCCTTAAATGGAACGATAGTATAATGTACTGGAACCAAGGGCAGAATGCATCAGTGAATTCGAGTTTATCTTCGCCGGTTTTGGTGTTGCAGTCAATAGGGATTTTGCAAATTTTGGATTCAAATTTGTCGTCTCCAGCGTTTGTTGCTTATAGCAGTGACTATGCAGAAGGTAGTGACGTATTGAGAATTTTGAAGTTGGATGGTGATGGGAATCTGAGAATTTATAGCTCTTCTAGAGGCAGTGGAACTGTAACTGCAAGATGGGCTGCTGTTGAAGATCAATGTGACGTTTTTGCTTACTGTGGGAACTATGGTATTTGCAGTTACAATGATTCAAACCCGGTTTGCGGGTGCGCATCTCAGAATTTTGAGATGATTGATCCAAATAACAGCCGGAAAGGGTGTAGAAGGAAGGTGAATCTTGATGATTGTCCTGGAAGTGCAACTATGTTGCAGTTGGATCATGCTCAGTTCTTAACTTATCCACCTGAGATTAGTACAGAGATCTTTTTCATTGGTATATCAGCTTGTAGAGGTAATTGTCTTTCAGGTTCTTGTATGGCTTCTACTGCATTGTCAGATGGCACGGGACAGTGTTACATAAAAAGTTCAGGTTTTATCAGTGGATATCAGAGCCCAGCACTGCCAAGCACTTCCTATATCAAGGTTTGCGGACCTGTGGCTCCAAACCCACCACCCTCTCTGAATGAGGCTGGGAGGAAAAAGAGTTGGAGGGTACGAGCTTGGGTTGTGGTGGTAGTGGTTTTGGGAACCCTTTTAGCTCTAATTGCCTTTGAAGGTGGTCTATGGTTTTGGTGTTGTAGGAACAGCGCAATATTAAGTGGGTTATCTGCTCAATATGCTCTTCTCGAGTATGCTTCTGGTGCCCCAGTCCAGTTCTCATACAAGGAGCTCCAGCGCTCAACAAAAGGGTTCAAAGAAAAGCTTGGAGCCGGTGGTTTTGGTGCTGTCTATAGAGGAATCCTTGCTAATAAAACTGTTGTTGCAGTGAAGCAACTTGAGGGCATTGAGCAAGGGGAGAAACAATTTAGGATGGAGGTTGCTACTATAAGCAGCACCCATCATCTCAATTTGGTGAGGCTAATTGGTTTCTGCTCAGAAGGGCGCCACAGGCTTTTAGTGTATGAGTTCATGAAAAATGGGTCTCTTGATAATCTTCTATTTGTCACAGAAGATCAATCAGGGAAGTTGTTGAATTGGGAGTATCGATTCAACATCGCCCTGGGCACTGCAAGGGGCATCACATACCTTCATGAGGAATGTCGAGATTGCATCGTCCATTGTGATATAAAACCTGAGAACATTCTCTTAGATGAGAATTACATTGCCAAAGTCTCAGATTTTGGCCTTGCAAAGCTCATAAATCCCAAGGACCATAGGCACCGAACTTTGACGAGTGTGAGAGGAACCAGAGGATATTTAGCTCCAGAATGGCTTGCTAATCTTCCCATAACTTCCAAATCTGATGTTTACAGCTATGGTATGGTATTGTTGGAGATTGTGAGTGGAAGGAGGAACTTTGAAGTCTCAGATGAAAGACATAAGAAAAAGTTCTCTAACCGGGCTTACGAAGAGTTTGAGAAAGGTAATATCAAGGGAATTATTGACAGAAGACTGGACGACCAAGAAGTTGATATGGAACAAGTGAAAAGGGCGATTATGGTAAGCTTTTGGTGCATCCAGGAGCAGCCATCTCAGAGGCCAACAATGAGCAGAGTCGTGCAAATGTTAGAAGGGATAACCGAGATTGAGAAGCCACCTGCCCCGAAATCTGCAATAGAAGGACCTATTAGTGGAACAAGCACTCATTTGAGCAGCAATGCCAGTGCTTTCTCCACAGTCGCAGCCTCACCCCAGGGTCAGTCTTCATCTTCTTCGTTCCACAACAGTGGTGTTTCATCTTTGACTTCAGGTAGGAACACGGAGAAGGCAACTTCGTCCCTTCTACAATCCGAACCATAG 2508 0.4597 MELRIQALLLSVFLAAISAAAISPGSTLFASNTNQTWSSPQKTFSLHFVPADPQTSPPSFIAAIVYAGDTPIIWSAGNGSSVDSGGSFQFLSTGSLRLVNGSGSTVWDSGTSNLNVSSASLQDDGNLVLSNSTRTVWSTFDHPTDTIVPSQNFTTNKVLLSGLYSFNFLSSGNLTLKWNDSIMYWNQGQNASVNSSLSSPVLVLQSIGILQILDSNLSSPAFVAYSSDYAEGSDVLRILKLDGDGNLRIYSSSRGSGTVTARWAAVEDQCDVFAYCGNYGICSYNDSNPVCGCASQNFEMIDPNNSRKGCRRKVNLDDCPGSATMLQLDHAQFLTYPPEISTEIFFIGISACRGNCLSGSCMASTALSDGTGQCYIKSSGFISGYQSPALPSTSYIKVCGPVAPNPPPSLNEAGRKKSWRVRAWVVVVVVLGTLLALIAFEGGLWFWCCRNSAILSGLSAQYALLEYASGAPVQFSYKELQRSTKGFKEKLGAGGFGAVYRGILANKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDNLLFVTEDQSGKLLNWEYRFNIALGTARGITYLHEECRDCIVHCDIKPENILLDENYIAKVSDFGLAKLINPKDHRHRTLTSVRGTRGYLAPEWLANLPITSKSDVYSYGMVLLEIVSGRRNFEVSDERHKKKFSNRAYEEFEKGNIKGIIDRRLDDQEVDMEQVKRAIMVSFWCIQEQPSQRPTMSRVVQMLEGITEIEKPPAPKSAIEGPISGTSTHLSSNASAFSTVAASPQGQSSSSSFHNSGVSSLTSGRNTEKATSSLLQSEP 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0945 835 CDD B_lectin 31 143 IPR001480 -
Glsi12g0945 835 Pfam D-mannose binding lectin 73 158 IPR001480 -
Glsi12g0945 835 PANTHER OS07G0415500 PROTEIN 10 771 - -
Glsi12g0945 835 ProSiteProfiles Bulb-type lectin domain profile. 19 142 IPR001480 -
Glsi12g0945 835 ProSiteProfiles Bulb-type lectin domain profile. 144 262 IPR001480 -
Glsi12g0945 835 MobiDBLite consensus disorder prediction 777 835 - -
Glsi12g0945 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 143 265 - -
Glsi12g0945 835 CDD STKc_IRAK 491 762 - -
Glsi12g0945 835 Gene3D - 141 265 IPR036426 -
Glsi12g0945 835 Gene3D Phosphorylase Kinase; domain 1 456 559 - -
Glsi12g0945 835 SMART blect_4 28 143 IPR001480 -
Glsi12g0945 835 ProSiteProfiles Protein kinase domain profile. 485 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0945 835 SMART serkin_6 485 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0945 835 Gene3D Transferase(Phosphotransferase) domain 1 560 773 - -
Glsi12g0945 835 PIRSF SRK 2 819 IPR024171 GO:0004674
Glsi12g0945 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Glsi12g0945 835 FunFam S-receptor-like serine/threonine-protein kinase 458 559 - -
Glsi12g0945 835 MobiDBLite consensus disorder prediction 767 835 - -
Glsi12g0945 835 Pfam S-locus glycoprotein domain 231 294 IPR000858 GO:0048544
Glsi12g0945 835 Gene3D - 17 140 IPR036426 -
Glsi12g0945 835 Pfam Protein kinase domain 488 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0945 835 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 188 IPR036426 -
Glsi12g0945 835 ProSitePatterns Protein kinases ATP-binding region signature. 491 513 IPR017441 GO:0005524
Glsi12g0945 835 SUPERFAMILY Protein kinase-like (PK-like) 468 760 IPR011009 -
Glsi12g0945 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 142 - -
Glsi12g0945 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 560 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0945 Glsi-ChrGlsi12 27222949 27225456 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0945 458 769 Receptor kinase-like Gene Family AT5G20050 44.000 8.36e-81 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi12g0945 Pkinase 4.9e-53 CL0016