Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0942 ATGGCTGCTTCCTCCTCCGGCAATTCCCTCTCAGCTTCTTCTTCTACTTTCTCTCACAAACCGTTGAATTTCTCGCCCGATTACCCCCAGAGAATCACTCTCACACCCGATCAGGTCAACCACTGCACAGAAGCATTAGCGTTCTTCAGGGAGAAACTCCAGACACCTTACAAGATCGTTCAAGAGTTTGCCCACTTGCAGGCTAATAGGATAACACCAAATGAGATGAGGACAAGATGCCTTGTAGCTCTAAATGATGTAAATGTGAGCAAAAATCGGTACACAGACGTCTTACCATTTGACAATAACAGGATCGTTCTCGAATCAAGCACAGATTATAGACCTACAGCCAAGGGATATATTAATGCAAGCTTCATCTCGACGTCTTCCTCTGGAAGTGTTTCTCAGTTTATAGCTACACAAGGCCCACTGCCACACACTTATGAGGATTTCTGGGAAATGGCTATTCAATATCACTGCCCTGCGATTGTGATGCTTACTAGGCTGGTGGACAATTACAAGATGGTAAAATGCGGAGATTATTTTCAAGCTGAAGATGGACCTAGAGAATTTGGTAATATCTCTATTATCAGTAAGTGGATGAAAACTACTGAAACTTCACTGGTATTGCGCCATTTGGAGGTGAAGCACAAAGAGCCAGAAGATATGCCCTTGTCTGTTTTGCACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAAAGATACATATGCTGTGCGTGAAATTTTGAAAAGATTATACCATTTACCTCCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGCAGAACTGGAACATACTGTGCAATTCACAACACAATTCAGAGAATCCTTGCTGGTGATATGTCTGCCTTGAATCTCGCTAATACCATAGTTGTCTTCAGGTCCCAGCGTATTGGAATGGTTCAGACACAGGACCAGTACTTTTTCTGCTATCAAGCTATTATAGATGAACTGGAAGACCTTGTTCATTTGCAGGCATGGCAAACTTCCATTGGCATCCTTTTTGTTGTAGTGCTTACCCAAAATCTATGGGAGAACAGAATGGCTTTAGGAACATGA 1095 0.432 MAASSSGNSLSASSSTFSHKPLNFSPDYPQRITLTPDQVNHCTEALAFFREKLQTPYKIVQEFAHLQANRITPNEMRTRCLVALNDVNVSKNRYTDVLPFDNNRIVLESSTDYRPTAKGYINASFISTSSSGSVSQFIATQGPLPHTYEDFWEMAIQYHCPAIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNISIISKWMKTTETSLVLRHLEVKHKEPEDMPLSVLHIQYPEWPDHGVPKDTYAVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCAIHNTIQRILAGDMSALNLANTIVVFRSQRIGMVQTQDQYFFCYQAIIDELEDLVHLQAWQTSIGILFVVVLTQNLWENRMALGT 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0942 364 FunFam Tyrosine-protein phosphatase non-receptor type 12 36 337 - -
Glsi12g0942 364 Gene3D Protein tyrosine phosphatase superfamily 35 331 IPR029021 -
Glsi12g0942 364 PRINTS Protein tyrosine phosphatase signature 296 311 IPR000242 GO:0004725|GO:0006470
Glsi12g0942 364 PRINTS Protein tyrosine phosphatase signature 263 281 IPR000242 GO:0004725|GO:0006470
Glsi12g0942 364 PRINTS Protein tyrosine phosphatase signature 137 157 IPR000242 GO:0004725|GO:0006470
Glsi12g0942 364 PRINTS Protein tyrosine phosphatase signature 225 242 IPR000242 GO:0004725|GO:0006470
Glsi12g0942 364 PRINTS Protein tyrosine phosphatase signature 119 126 IPR000242 GO:0004725|GO:0006470
Glsi12g0942 364 PRINTS Protein tyrosine phosphatase signature 312 322 IPR000242 GO:0004725|GO:0006470
Glsi12g0942 364 SMART PTPc_3 58 331 IPR000242 GO:0004725|GO:0006470
Glsi12g0942 364 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 41 332 IPR029021 -
Glsi12g0942 364 ProSitePatterns Tyrosine specific protein phosphatases active site. 266 276 IPR016130 GO:0016311|GO:0016791
Glsi12g0942 364 Pfam Protein-tyrosine phosphatase 88 327 IPR000242 GO:0004725|GO:0006470
Glsi12g0942 364 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 248 320 IPR000387 GO:0016311|GO:0016791
Glsi12g0942 364 SMART ptp_7 226 328 IPR003595 -
Glsi12g0942 364 CDD PTPc_plant_PTP1 120 323 - -
Glsi12g0942 364 ProSiteProfiles PTP type protein phosphatase domain profile. 59 329 IPR000242 GO:0004725|GO:0006470
Glsi12g0942 364 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 49 332 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0942 37 333 Protein tyrosine phosphatase (PTP) family AT1G71860 74.074 9.68e-171 477
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g0942 12 27187512 27196688 Glsi12g0942 12 27187512 27196688 ECH