Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0934 ATGCAGGCAAATTTGTCACCTGATCCACCCTCTTTTCCAGATTTCAGTTTGCAGCAGAGATGGGAAGATTCCTCTATATCAGATTATGGTATCAGCATTGAAGCACCATTTAAAGTCTTCGACCAACCCTCTGGAGCTCAGTCTTCGCTTCCATGTGACTCCAACAATGAGATTAAGATCCCCGATCAAGAAATTTGTCAGATTGGTGACACATCACAAACAAGTAAGCTCGAAAATTGGGATCCCGCTGTAATGTTGAATAATCTTTCTTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCATGTGATTGTTGGTCAGAAAGGCCAACAATTTGCACAACCTGAAGAACTTGTAACTCAAGAACAGCAGCTTGTCACAGCTGATCTTACATCGATTGTTGTTCAGTTGATCTCTACAGCAGGTAGTCTTCTTCCTTCTGTCAGGCATACCCTTACAAACAAGAGTCCATCGGTTGGACAGCATGGCGAGCTTCCTGGGATGACCTTTCTGTCTGGACTAGGCCAAAGGAGTAGTATTCAGCCACATCATGATAGTGGAGATAAAATATCCTATCAATCCAACCAGGTTAATCTAACTAATACTTGCGAAATGGAGCAAAACTACAATACAGAAGAACATGAATCAAAAGATGAAGAGGATGTGGACGAGGGTGAGAACCTTCCACCGGGTTCTTATGAGATTTTACAGCTAGAAAAGGAAGAAATCCTTGCACCTCATACCCATTTCTGTACAATATGTGGGAAGGGATTCAAGAGAGATGCAAATCTTCGCATGCACATGCGAGGCCACGGTGATGAGTACAAAACCCCGGAAGCGCTTGCAAAACCTAATAAGGAATCTGTGTCTGAACCAAAGCTCTTCAAGAGGTATTCCTGCCCCTACGCCGGCTGCAAGAGGAATAAGGAGCACAAGAAGTTTCAACCTCTGAAGACTATTTTATGTGTGAAAAACCATTACAAAAGAACACACTGTGACAAGAGTTACATTTGCAGCAGATGCAACACCAAGAAATTTTCAGTCATGGCAGATCTTAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTCGGACACATTGCTCTGTTCCAAGGCCATACACCAGCCATACCCTTGGATGAACCTAAAATACCGGCTATGCTGGCTGATCTGAAAAGCAAGGAAAGCAGTAATAAAATAGGAAGTATAAACTTCAGTGTTGGATCAAATCCTTCTAGTGGAAATGGGGTTCAAAACATCATGGATGTGAAAGGTATTATTGATGATCCTAACAATTATTTCTCGTCATTGAACTTCGAAACATGTAACTTTGGTGACTTGAGTGAATTCCCACGACCCCCATTTGAAGACTCAGAAGGTTTGTTCCCTTTTCTCATGCCCGAATCTTTCAATTATGCTCCTAAATCTGGAGGAGAATCAAGTTCTGACAATCTGTAG 1509 0.4195 MQANLSPDPPSFPDFSLQQRWEDSSISDYGISIEAPFKVFDQPSGAQSSLPCDSNNEIKIPDQEICQIGDTSQTSKLENWDPAVMLNNLSFLEEKIHQLQDLVHVIVGQKGQQFAQPEELVTQEQQLVTADLTSIVVQLISTAGSLLPSVRHTLTNKSPSVGQHGELPGMTFLSGLGQRSSIQPHHDSGDKISYQSNQVNLTNTCEMEQNYNTEEHESKDEEDVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESVSEPKLFKRYSCPYAGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSYICSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDEPKIPAMLADLKSKESSNKIGSINFSVGSNPSSGNGVQNIMDVKGIIDDPNNYFSSLNFETCNFGDLSEFPRPPFEDSEGLFPFLMPESFNYAPKSGGESSSDNL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0934 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 278 IPR013087 -
Glsi12g0934 502 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 67 469 IPR044300 GO:0010044|GO:0010447
Glsi12g0934 502 SUPERFAMILY beta-beta-alpha zinc fingers 250 275 IPR036236 -
Glsi12g0934 502 ProSitePatterns Zinc finger C2H2 type domain signature. 253 273 IPR013087 -
Glsi12g0934 502 SMART c2h2final6 251 273 IPR013087 -
Glsi12g0934 502 SMART c2h2final6 300 333 IPR013087 -
Glsi12g0934 502 SMART c2h2final6 338 360 IPR013087 -
Glsi12g0934 502 Gene3D Classic Zinc Finger 235 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0934 Glsi-ChrGlsi12 27060517 27062025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0934 219 500 C2H2 Transcription Factor Family AT1G34370 69.792 5.71e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi12g0934 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g0934 12 27060517 27062025 Glsi12g0934 12 27060517 27062025 ECH