Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0930 ATGGTTGCTATAGATAATGACCAGTATGATGCATGCCTTGATGCCATGTTGCTATCTAGTGGTCAAGTTTACCCTGCAGTGTTGAATGCTGCCATTGAACTGAACCTATTTGAGATCATTGGTGAGGAAAGCCCTAAGGGCATGTCACCCTCTCAGATTGCTTCTAAGCTTCCAACTCAACACGGGGAAACACCCGGAATGCTAGATCGGATGCTGTTTTTGCTTGCTAGCCACTCTCTTCTTACTTGTTCTAGGCGTTTAGATCAAGATGGTAGGGTTGAGAGACTATATGCGCTCTCTCCCACTGGTAAATACTTGTTCACTGATGATGATGGTGCCTCCTATGCTTCACTCTCAAAATTGTGCTGCCACCCAGCTTATATAGCAGTTTGGAAAAATTTCAAGGAAGTAATTTTGGACGAGGAGAAGGACTTGTTTAAGAAGGTACATGGAATGTCTCTGTTCGGATACATGGAAACAGATCCAACATTTAAACCATTGTTCCACAGAGCAATGGCTGATGTATCTGCCATGCATATGAGGCAGATTCTTGAAACATACAAAGGATTTGAGGCAATATCAACTCTTGTTGATGTGGGTGGTGGTATTGGCCAAAGCCTCAAAATGATCACTGCTAAGTATCCTTCAATCAAGGGCATCAACTTTGATTTGCCCCAAGTTGTAAAACATGCTCCATCCTACCCAGGAATTGAGCATGTTGGAGGCAATATGTTCCAAAGTGTCCCAGAGGGTGATGCAATAATGATTAAGGCTATAACTCATAACTGGACAGATGAAAAATGCATAGAAATTCTGAAAAACTGCCATAAATCCTTGAAGAAAGGCGGGAAGGTGATTATTATAGACTTGATAATGCCAGAAATACCAAAGGTAAGTGATGGTGATAAGTATGTTTCCATTCTTGACAATGTGATGTTTCTCCAAGCTGGTGGGAAGGAAAGGACTGAGAAAGAATTTGAAGCTCTGTGCAGAGGTGCTGGGTTTTCCAGATATGACATTGCTGCTTGTGTTTTCTCTGCTTTGGGAGTCATTGAGTTTTATAAATAA 1068 0.4167 MVAIDNDQYDACLDAMLLSSGQVYPAVLNAAIELNLFEIIGEESPKGMSPSQIASKLPTQHGETPGMLDRMLFLLASHSLLTCSRRLDQDGRVERLYALSPTGKYLFTDDDGASYASLSKLCCHPAYIAVWKNFKEVILDEEKDLFKKVHGMSLFGYMETDPTFKPLFHRAMADVSAMHMRQILETYKGFEAISTLVDVGGGIGQSLKMITAKYPSIKGINFDLPQVVKHAPSYPGIEHVGGNMFQSVPEGDAIMIKAITHNWTDEKCIEILKNCHKSLKKGGKVIIIDLIMPEIPKVSDGDKYVSILDNVMFLQAGGKERTEKEFEALCRGAGFSRYDIAACVFSALGVIEFYK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0930 355 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 16 355 IPR016461 GO:0008168
Glsi12g0930 355 Gene3D Vaccinia Virus protein VP39 107 355 IPR029063 -
Glsi12g0930 355 FunFam Caffeic acid 3-O-methyltransferase 2 106 - -
Glsi12g0930 355 CDD AdoMet_MTases 195 292 - -
Glsi12g0930 355 PANTHER O-METHYLTRANSFERASE 15 345 IPR016461 GO:0008168
Glsi12g0930 355 Pfam O-methyltransferase domain 131 336 IPR001077 GO:0008171
Glsi12g0930 355 Gene3D - 2 106 IPR036388 -
Glsi12g0930 355 Pfam Dimerisation domain 27 76 IPR012967 GO:0046983
Glsi12g0930 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 352 IPR029063 -
Glsi12g0930 355 SUPERFAMILY "Winged helix" DNA-binding domain 7 111 IPR036390 -
Glsi12g0930 355 PIRSF O-mtase 2 355 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0930 Glsi-ChrGlsi12 27019269 27021965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0930 2 355 Monolignol Biosynthesis Gene Families AT5G54160 50.700 1.93e-114 335