Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0929 ATGGGTGGTGCCACAGAGAATTATCACCATCAGAATATGAAAGCCCCCCCTATGAAAGAAAAAGAAGATGATTATGATGCTTGCCTTCATGCCATGCTTCTATGTGCTGGTCAGGTAAACGCTGCTGTTCTGAATGCTGCTATTGAGCTCAACCTGTTTGATATAATTGCTCAGTCAAGCCCAGATGGTGGTTTTGTTTCCCCTTTTGAAATTGCTTCGAAACTTCCCACTAAGAATAATGCAGAAGCACCACACAGGCTTGATCGGATGCTGCGTTTGCTTGTGGCTCACTCTCTTCTCACTTGTTCTATCAGAACCACCAAAGATGGCAGCACTGAGAGACTCTATGCTCTCTCTCCCACTGGTGAATACTTTGTCAGCAAAGAAGATGGTGCTTCCTGGGCTGCGTTGATGCCCAGTTTCTCCTACCATCCTCACATGGCAGAAATTTTTTTAAACTTGAAGACGGCAATGCTTATTAATGGTGGGAATGACCTAAGCAAGATAATTCATGGCAAGTCTGTGTACCAATACATGGAAACAGATCCTCCAATGAAACAAAAATTCCATAGGGCTATGTCTGATCTCTCCTCTTTACACATGCTCAACATTCTTCAAACATACAAAGGCTTTGAGGGAATACCGACTCTTGTTGATGTGGGAGGTGGTATGGGGCAGTCCCTCAAAATGATCATATCCAAGTACCCTTCAATTAATGGCATTAATTTTGATTTGCCCCATGTTGTTCAAGATGCCCCACCCTATCCAGAAGGAATCAAACATGTTGGAGGAGACATGTTCAAAAGTGTCCCAGAAGGTGATGCCATTATGATCAAGGGCACAACTCATAACTGGTCAGATGAAAAATGCATAAAGCTTTTCAGCAATTGCCATGAGGCCTTGAAGAAAGGAGGGAAGGTTATAGTAATAGACTTGATAATGCCAGAAGAGCCAGAGTTAAGCAGTGCTGCTAAAAGTGTTTCCATTTTTGACAATGTTATGTTTTCCCAAGGAGGTGGAATGGAAAGAACTGAGAAGCAGTTTGAGGCATTATGCAAAAAATCTGGGTTTTCTGGTTTTCAAGTTGCTTGCCGTGCTTTATCCATCTTAGGAGTCATGGAGTTTTACAAATAA 1134 0.4242 MGGATENYHHQNMKAPPMKEKEDDYDACLHAMLLCAGQVNAAVLNAAIELNLFDIIAQSSPDGGFVSPFEIASKLPTKNNAEAPHRLDRMLRLLVAHSLLTCSIRTTKDGSTERLYALSPTGEYFVSKEDGASWAALMPSFSYHPHMAEIFLNLKTAMLINGGNDLSKIIHGKSVYQYMETDPPMKQKFHRAMSDLSSLHMLNILQTYKGFEGIPTLVDVGGGMGQSLKMIISKYPSINGINFDLPHVVQDAPPYPEGIKHVGGDMFKSVPEGDAIMIKGTTHNWSDEKCIKLFSNCHEALKKGGKVIVIDLIMPEEPELSSAAKSVSIFDNVMFSQGGGMERTEKQFEALCKKSGFSGFQVACRALSILGVMEFYK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0929 377 SUPERFAMILY "Winged helix" DNA-binding domain 23 129 IPR036390 -
Glsi12g0929 377 FunFam Caffeic acid 3-O-methyltransferase 9 125 - -
Glsi12g0929 377 Pfam O-methyltransferase domain 159 358 IPR001077 GO:0008171
Glsi12g0929 377 PIRSF O-mtase 9 377 IPR016461 GO:0008168
Glsi12g0929 377 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 377 IPR016461 GO:0008168
Glsi12g0929 377 Pfam Dimerisation domain 43 95 IPR012967 GO:0046983
Glsi12g0929 377 Gene3D - 8 125 IPR036388 -
Glsi12g0929 377 CDD AdoMet_MTases 216 314 - -
Glsi12g0929 377 PANTHER O-METHYLTRANSFERASE 34 375 IPR016461 GO:0008168
Glsi12g0929 377 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 142 374 IPR029063 -
Glsi12g0929 377 Gene3D Vaccinia Virus protein VP39 127 377 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0929 Glsi-ChrGlsi12 27012440 27014926 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0929 24 369 Monolignol Biosynthesis Gene Families AT5G54160 49.856 1.83e-108 320