Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0927 ATGGGTGCTGCCACAGAGAATTGTCACCATCAGAATATTAAAACCTTCCCTATGAAAGAAGATGATTATGATGCTTGCCTTCATGCCATGCTTCTATGTGCTGGTCAGGTAAACGCTGCTGTTCTGAATGCTGCTATTGAGCTCAACCTGTTTGATATAATTGCTCAGTCAAGCCCAGAAGAAGCACCACACAGGCTTGATCGCATCCTGCGTTTGCTTGTGGTTCACTCTCTTCTCACTTGTTCTGTGAGAACCACCAAAGATGGCATCACTGAGAGACTCTATGCTCTCTCTCCCACTGGTGAATACTTTGTCAGCAAAGAAGATGGTGCTTCCTGGGCTGCGTTGAGGCCCAATTTCTCCTACCATCCTCACATGGCAGAAGTTTTTTTAAACTTGAAGACTGCAAAGCTTAATGGTGGGAATGACCTAAGCAAGATAGTTCATGGCAAGTCTGTGTACCAATACATGGAAACAGATCCTCCAATGAAACGCAAATTCCATAGGTCTATGGCTGATCTCTCTGCTTTACACATGCTCGACATTCTTCAAACATACAAAGGCTTTGAGGGAATACCAACACTTGTTGATGTGAGAGGTGGTATAGGGCAGTCCCTCAAAATGATCATATCCAGGGCACAACTCATAACTGGAGGTGGAATGGAAAGAACTGAGAAGCAGTATGAGGCATTATGCAAAGAATCTGGGTTTTCTGTTTTTCGAATTGCTTGTCATGCTTTATCCATCTTAGGAGTCATGGAGTTTTACAAATAA 774 0.4341 MGAATENCHHQNIKTFPMKEDDYDACLHAMLLCAGQVNAAVLNAAIELNLFDIIAQSSPEEAPHRLDRILRLLVVHSLLTCSVRTTKDGITERLYALSPTGEYFVSKEDGASWAALRPNFSYHPHMAEVFLNLKTAKLNGGNDLSKIVHGKSVYQYMETDPPMKRKFHRSMADLSALHMLDILQTYKGFEGIPTLVDVRGGIGQSLKMIISRAQLITGGGMERTEKQYEALCKESGFSVFRIACHALSILGVMEFYK 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0927 257 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 257 IPR016461 GO:0008168
Glsi12g0927 257 PANTHER O-METHYLTRANSFERASE 33 212 IPR016461 GO:0008168
Glsi12g0927 257 Gene3D - 60 104 IPR036388 -
Glsi12g0927 257 Gene3D - 6 59 IPR036388 -
Glsi12g0927 257 SUPERFAMILY "Winged helix" DNA-binding domain 21 108 IPR036390 -
Glsi12g0927 257 Pfam O-methyltransferase domain 132 211 IPR001077 GO:0008171
Glsi12g0927 257 Gene3D Vaccinia Virus protein VP39 215 257 IPR029063 -
Glsi12g0927 257 Gene3D Vaccinia Virus protein VP39 107 214 IPR029063 -
Glsi12g0927 257 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 255 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0927 Glsi-ChrGlsi12 26995487 27005995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0927 17 218 Monolignol Biosynthesis Gene Families AT5G54160 40.553 6.98e-40 139