Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0923 ATGGGTTCATATTCCACAGAAAATCACCAGCTGAAACCTTCTGCTCCAAAAGCAGAAGACGAAGCATGCCTTTCTGCCATGTATCTCACTACCAGCCAGGTCTATCCCGCAGTTCTAAATGCAGCCATTGAACTAAACTTGTTTGATATCATAGCCAAGAAGGCAAACCCACCTGGTTCTTTTATGTCTGCCCATGAAATTGCTTCCCACCTTCCTTCCCAGCACCCCGATATGCCCGACCGCCTCGAACGGATGCTCCGGTTGCTCGCTAGTTACACTCTCCTCTCTAGCTCCTCTCGTAACAACGAAGAAGATGGCAGCTCCGTCACCGTTTATGGCCTCTCGCTGGCTGGAAAATACTGTGTCCCTAATGAAAATGAGGGCTACTTGGCTTCCTTCACCACCTTTCTCTGTCATAAAGCATTACTGGAGATTTGGATGAATTTCAAGGACGCGGTAGTTGATCCAGACATTGACCTGTTCAAGAAAGTTCATGGGCTAACAAGTTACCAGGTGCTTGAGTTGTACACTGGTTTTGAGGGAGTATCAACGTTGGTTGATGTCGGTGGAGGAACTGGTCAAAACCTTAAAGTGATCATCTCCAAATATCCTTCCATTAAAGGCATTAACTTTGATCTCCCCCAAGTCATAGAAACTGCACCACCCATTCCTGGGATTGAGCATATTGGAGGAGACATGTTTGCAAGTGTTCCTGAGGGCGATGCCATAATATTAAAGGCCGTGTGCCATAACTGGTCAGATGAAAAATGCATAGAATTTCTGAGCAAGTGTCACGAAGCATTGCCAGAAAATGGGAAGGTGATAGTGGTGGAGTTCATATTACCAGAATCACCAGAGGCTACTGAAGCTTCAAAATTGGTTTCAACTCTGGACAACCTCATGTTCATCACAGTGGGAGGAAGAGAAAGAACTGAGAAACAGTTTGAGAGCTTGGGAAAGCGTTCTGGGTTTTCTAGGTTCCAAGTTGCTTGCCGAGCTTTCTCTGCTTTGGGAATCATGGAGTTTTATAAATAA 1035 0.4551 MGSYSTENHQLKPSAPKAEDEACLSAMYLTTSQVYPAVLNAAIELNLFDIIAKKANPPGSFMSAHEIASHLPSQHPDMPDRLERMLRLLASYTLLSSSSRNNEEDGSSVTVYGLSLAGKYCVPNENEGYLASFTTFLCHKALLEIWMNFKDAVVDPDIDLFKKVHGLTSYQVLELYTGFEGVSTLVDVGGGTGQNLKVIISKYPSIKGINFDLPQVIETAPPIPGIEHIGGDMFASVPEGDAIILKAVCHNWSDEKCIEFLSKCHEALPENGKVIVVEFILPESPEATEASKLVSTLDNLMFITVGGRERTEKQFESLGKRSGFSRFQVACRAFSALGIMEFYK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0923 344 PIRSF O-mtase 4 175 IPR016461 GO:0008168
Glsi12g0923 344 PIRSF O-mtase 167 344 IPR016461 GO:0008168
Glsi12g0923 344 Gene3D - 34 172 IPR036388 -
Glsi12g0923 344 Gene3D Vaccinia Virus protein VP39 159 333 IPR029063 -
Glsi12g0923 344 Pfam Dimerisation domain 38 90 IPR012967 GO:0046983
Glsi12g0923 344 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 128 336 IPR029063 -
Glsi12g0923 344 CDD AdoMet_MTases 184 281 - -
Glsi12g0923 344 SUPERFAMILY "Winged helix" DNA-binding domain 19 125 IPR036390 -
Glsi12g0923 344 FunFam Caffeic acid 3-O-methyltransferase 5 121 - -
Glsi12g0923 344 Pfam O-methyltransferase domain 161 325 IPR001077 GO:0008171
Glsi12g0923 344 PANTHER O-METHYLTRANSFERASE 26 334 IPR016461 GO:0008168
Glsi12g0923 344 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 344 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0923 Glsi-ChrGlsi12 26947744 26949579 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0923 5 344 Monolignol Biosynthesis Gene Families AT5G54160 45.504 2.98e-106 313