Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0921 ATGGTTACTACAGATAATGAACACTATGAGGCATGCCTTGATGCCATGTTGCTGTCTAGTGGTCAAGTTTACCCTGCAGTGTTGAATGCTGCCATTGAACTGAACCTATTTGAGATCATTGGTGAAGGAAGCCCTAATGGCCAGTCACCCTCTGAGATTGCTTCTAAGCTTCCAACTCAACACCGGGAAACAACCGAAAGGCTCGACCGGATGCTGTTTTTGCTTGCTACCCACTCTCTTCTTACTTGTTCTAGGCGTTTTGATCAAGATGGTAGGGTTGAGAGACTGTATGCGCTCTCTCCCACTGGTAAATACTTGCTCACTGATGATGACGGCGCCTCCTATGCTTCACTCTCAAAATTGTGCTGCCACCCGGCTTATATAGCAGTTTGGCAAAATTTCAAGGAAGTAATTTTGGACGAGGAGGAGGACTTGTTTAAGAAGGTACATGGAATGTCTTTGTTCGAATACATGGAAACAGATCCAACATTTAAACCATTGTTCCACAGAGCAATGGCTGATGTATCTGCCATGCATATGAGGCAGATTCTTGAAACATACAAAGGATTTGACGCAATATCAACTCTTGTTGATGTGGGTGGTGGTATTGGCCAAAGCCTCAAAATGATCACTGCTAAGTATCCTTCAATTCAGGGCATCAACTTTGATTTGCCCCAAGTTGTAAAACATGCTCCCTCCTACCCAGGAATTAAGCATGTTGGAGGCAATATGTTCCAATGTGTCCCAGAGGGTGATGCAATAATGATTAAGGCTATAACTCATAACTGGACAGATGAAAAATGCATAGAAATTCTGAAAAACTGCCATAAATCCTTGAAGAAAGGTGGGAAGCTGATTATTATAGACTTGATAATGCCAGAAATACCAAAGGTAAGTGATGGTGATAAGTATGTTTCCATTCTTGACAATGTGATGTTTCTCCAAGCTGGTGGGAAGGAAAGAAATGAGAAGGAATTTGAAGCTCTGTGCAAAGATGCTGGGTTTTCCAGATATGAAATTGCTGCTTGTGTTTTCTCTGCTTTGGGAGTCATTGAGTTTTATAAACAATAA 1071 0.4183 MVTTDNEHYEACLDAMLLSSGQVYPAVLNAAIELNLFEIIGEGSPNGQSPSEIASKLPTQHRETTERLDRMLFLLATHSLLTCSRRFDQDGRVERLYALSPTGKYLLTDDDGASYASLSKLCCHPAYIAVWQNFKEVILDEEEDLFKKVHGMSLFEYMETDPTFKPLFHRAMADVSAMHMRQILETYKGFDAISTLVDVGGGIGQSLKMITAKYPSIQGINFDLPQVVKHAPSYPGIKHVGGNMFQCVPEGDAIMIKAITHNWTDEKCIEILKNCHKSLKKGGKLIIIDLIMPEIPKVSDGDKYVSILDNVMFLQAGGKERNEKEFEALCKDAGFSRYEIAACVFSALGVIEFYKQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0921 356 FunFam Caffeic acid 3-O-methyltransferase 1 106 - -
Glsi12g0921 356 Gene3D Vaccinia Virus protein VP39 107 355 IPR029063 -
Glsi12g0921 356 Gene3D - 1 106 IPR036388 -
Glsi12g0921 356 CDD AdoMet_MTases 195 292 - -
Glsi12g0921 356 PANTHER O-METHYLTRANSFERASE 15 345 IPR016461 GO:0008168
Glsi12g0921 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 16 355 IPR016461 GO:0008168
Glsi12g0921 356 Pfam Dimerisation domain 27 76 IPR012967 GO:0046983
Glsi12g0921 356 PIRSF O-mtase 1 355 IPR016461 GO:0008168
Glsi12g0921 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 352 IPR029063 -
Glsi12g0921 356 Pfam O-methyltransferase domain 131 336 IPR001077 GO:0008171
Glsi12g0921 356 SUPERFAMILY "Winged helix" DNA-binding domain 7 111 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0921 Glsi-ChrGlsi12 26920038 26922586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0921 10 356 Monolignol Biosynthesis Gene Families AT5G54160 49.429 7.73e-111 326