Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0917 ATGGGTTCATATTCCACAGAAAATCACCAGCTGAAACCTTCTGCTCCAAAAGCAGAAGACGAAGCATGCCTTTCTGCCATGTATCTCACTACCAGCCAGGTCTATCCCGCAGTTCTAAATGCAGCCATTGAACTAAACTTGTTTGATATCATAGCCAAGAAGGCAAACCCACCTGGTTCTTTTATGTCTGCCCATGAAATTGCTTCCCACCTTCCTTCCCAGCACCCCGATATGCCCGACCGCCTCGAACGGATGCTCCGGTTGCTCGCTAGTTACACTCTCCTCTCTAGCTCCTCTCGTAACAACGAAGAGGATGGCAGCTCCGTCACCGTTTATGGCCTCTCGCTGGCTGGAAAATACTGTGTCCCTAATGAAAATGAGGGCTACTTGGCTTCCTTCACCACCTTTCTCTGTCATAAAGCATTACTGGAGATTTGTTTTATAATGATGTTATCTGAAATTCCCAGGATGAATTTCAAGGACGCGGTAGTTGATCCAGACATTGACCTGTTCAAGAAAGTTCATGGGCTAACAAGTTACCAGTACTTCGGGACACATCCTAAACTGAACAACATATTCAACAAAGCAATGAAGGATGTGTGTGCAACGGAGATGAACAGGGTGCTTGAGTTGTACACTGGTTTTGAGGGAGTATCAACGTTGGTTGATGTCGGTGGAGGAACTGGTCAAAACCTTAAATTGATCGTCTCCAAATATCCTTCCATTAAAGGCATTAACTTTGATCTCCCCCAAGTCATAGAAACTGCACCACCCATTCCTGGGATTGAGCATATTGGAGGAGACATGTTTGCAAGTGTTCCTGAGGGCGATGCCATAATATTAAAGGCCGTGTGCCATAACTGGTCAGATGAAAAATGCATAGAATTTCTGAGCAAGTGTCACGAAGCATTGCCAGAAAATGGGAAGGTGATAGTGGTGGAGTTCATATTACCAGAATCACCAGAGGCTACTGAAGCTTCAAAATTGGTTTCAACTCTGGACAACCTCATGTTCATCACAGTGGGAGGAAGAGAAAGAACTGAGAAACAGTTTGAGAGCTTGGGAAAGCGTTCTGGGTTTTCTAGGTTCCAAGTTGCTTGCCGAGCTTTCTCTGCTTTGGGAGTCATGGAGTTTTATAAATAA 1143 0.4497 MGSYSTENHQLKPSAPKAEDEACLSAMYLTTSQVYPAVLNAAIELNLFDIIAKKANPPGSFMSAHEIASHLPSQHPDMPDRLERMLRLLASYTLLSSSSRNNEEDGSSVTVYGLSLAGKYCVPNENEGYLASFTTFLCHKALLEICFIMMLSEIPRMNFKDAVVDPDIDLFKKVHGLTSYQYFGTHPKLNNIFNKAMKDVCATEMNRVLELYTGFEGVSTLVDVGGGTGQNLKLIVSKYPSIKGINFDLPQVIETAPPIPGIEHIGGDMFASVPEGDAIILKAVCHNWSDEKCIEFLSKCHEALPENGKVIVVEFILPESPEATEASKLVSTLDNLMFITVGGRERTEKQFESLGKRSGFSRFQVACRAFSALGVMEFYK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0917 380 Pfam O-methyltransferase domain 159 361 IPR001077 GO:0008171
Glsi12g0917 380 Pfam Dimerisation domain 38 90 IPR012967 GO:0046983
Glsi12g0917 380 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 161 376 IPR029063 -
Glsi12g0917 380 PIRSF O-mtase 4 380 IPR016461 GO:0008168
Glsi12g0917 380 Gene3D Vaccinia Virus protein VP39 190 369 IPR029063 -
Glsi12g0917 380 CDD AdoMet_MTases 220 317 - -
Glsi12g0917 380 Gene3D - 34 208 IPR036388 -
Glsi12g0917 380 FunFam Caffeic acid 3-O-methyltransferase 5 121 - -
Glsi12g0917 380 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 380 IPR016461 GO:0008168
Glsi12g0917 380 SUPERFAMILY "Winged helix" DNA-binding domain 19 125 IPR036390 -
Glsi12g0917 380 FunFam Caffeic acid O-methyltransferase 124 380 - -
Glsi12g0917 380 PANTHER O-METHYLTRANSFERASE 26 370 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0917 Glsi-ChrGlsi12 26877703 26879564 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0917 5 380 Monolignol Biosynthesis Gene Families AT5G54160 46.684 1.62e-115 338