Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0915 ATGGGTGGTGCCACAAAGAATTATCACCATCAGAATATGAAAACCCTCCCTATGAAAGAAAAAGAAGATGATTATGATGCTAGCCTTCATGCCATGCTTCTATGTGCTGGTCAGGTAAACGCTGCTGTTCTGAATGCTGCTATTGAGCTCAACCTGTTTGATATAATTGCTCAGTCAAGTCCAGATGGTGGTTTTGTTTCCCCTTTTGAAATTGCTTCGAAACTTCCCACTAAGAATAATGCAGAAGCACCACACAGGTTTGATCGGATGCTGCGTTTGCTTGTGGCTCACTCTCTTCTCACTTGTTCTATGAGAACCACCAAAGATGGCAGCACTGAGAGACTCTTTGCTCTCTCTCCCACTGGTGAATACTTTGTCAGCAAAGCAGATGGTGCTTCCTGGGCTAAGTTGATGCCCAGTTTTTCCTACCATCCTCACATGGCAGAAGTTTTTCTAAACTTGAAGACCGCAATGCTTATTAATGGTGGGAATGACCTAAGCAAAATAATTCATGGCAAGTATGTGTACCAATACATGGAAACAGATCCTCCAATGAAACACAAATTCCATAGGGCTATGGCTGATCTCTCTTCTTTACACATGCTCAACATTCTTCAAACATACAAAGGCTTTGAGGGAATACCAACTCTTGTTGATGTGGGAGGTGGTGGGGCAGTCCCTCAAAATGATCATATCCAAGTACCCTTCAATTAA 714 0.4272 MGGATKNYHHQNMKTLPMKEKEDDYDASLHAMLLCAGQVNAAVLNAAIELNLFDIIAQSSPDGGFVSPFEIASKLPTKNNAEAPHRFDRMLRLLVAHSLLTCSMRTTKDGSTERLFALSPTGEYFVSKADGASWAKLMPSFSYHPHMAEVFLNLKTAMLINGGNDLSKIIHGKYVYQYMETDPPMKHKFHRAMADLSSLHMLNILQTYKGFEGIPTLVDVGGGGAVPQNDHIQVPFN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0915 237 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 237 IPR016461 GO:0008168
Glsi12g0915 237 SUPERFAMILY "Winged helix" DNA-binding domain 23 128 IPR036390 -
Glsi12g0915 237 FunFam Caffeic acid 3-O-methyltransferase 9 125 - -
Glsi12g0915 237 Pfam O-methyltransferase domain 159 226 IPR001077 GO:0008171
Glsi12g0915 237 PANTHER O-METHYLTRANSFERASE 32 226 IPR016461 GO:0008168
Glsi12g0915 237 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 143 223 IPR029063 -
Glsi12g0915 237 Gene3D Vaccinia Virus protein VP39 128 226 IPR029063 -
Glsi12g0915 237 Gene3D - 8 125 IPR036388 -
Glsi12g0915 237 Pfam Dimerisation domain 43 95 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0915 Glsi-ChrGlsi12 26855577 26864263 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0915 24 223 Monolignol Biosynthesis Gene Families AT5G54160 42.500 1.13e-39 138