Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0913 ATGGTTACTATAGATAATGAACACTATGAGGCATGCCTTGATGCCATGTTGCTGTCTAGTGGTCAAGTTTACCCTGCAGTGTTGAATGCTGCCATTGAACTGAACCTATTTGAGATCATTGGTGAAGGAAGCCCTAATGGCCAGTCACCCTCTGAGATTGCTTCTAAGCTTCCAACTCAACACTGGGAAACAACCGAAAGGCTCGATCGGATGCTGTTTTTGCTTGCTAGCCACTCTCTTCTTACTTGTTCTAGGCGTTTTGATCAAGATGGTAAGGTTGAGAGACTGTATGCGCTCTCTCCCACTGGTAAATACTTGCTCACTGATGATGGCGGCGCCTCCTATGCTTCACTCTCAAAATTGTGCTGCCACCCAGCTTATATAGCAGTTTGGCAAAATTTCAAGGAAGTAATTTTGGACGAGGAGGAGGACTTGTTTAAGAAGATTCTTGAAACATACAAAGGATTTGAGGCAATATCAACTCTTGTTGATGTGGGTGGTGGAATTAAGCATGTTGGAGGCAATATGTTCCAATGTGTCCCAGAGGGTGATGCAATAACGATTAAGAAAGGTGGGAAGCTGATTATTATAGACTTGATAATGACAGAATTACCAAAGTTAAGTGATGGTGATAAGTATGTTTCCATTCTTGACAATGTGATGTTTCTCCAAGCTGGTGGGAAGGAAAGAAATGAGAAGGAATTTGAAGATCTGTGCAAAGATGCTGGGTTTTCCAGATATGAAATTGCTGCTTGTGTTTTCTCTGCTTTGGGAAGAGCGAAGCATATTAAAACAAAAGTGAAGAAAGGAGATTCCACAGATCCAAAACCAAATATGGGTGCTGCCACAGAGAATTGTCACCATCAGAATATTAAAACCCTCCCTATGAAAGAAGATGATTATGATGCTTGCCTTCATGCCATGCTTCTATGTGCTGGTCAGGTAAACGCTGCTGTTCTGAATGCTGCTATTAAGCTCAACCTGTTTGATATAATTGCTCAGTCAAGTCCAGATGGTGGTTTTGTTTCCCCTTCTGAAATTGTTTCGAAACTCCCACAACGAATAATGCAGAAACACCACACAGGCTTGATCGCATCCTGCGTTTGCTTGTGGCTCACTCTCTTCTCACTTGTTCTGTGA 1140 0.4228 MVTIDNEHYEACLDAMLLSSGQVYPAVLNAAIELNLFEIIGEGSPNGQSPSEIASKLPTQHWETTERLDRMLFLLASHSLLTCSRRFDQDGKVERLYALSPTGKYLLTDDGGASYASLSKLCCHPAYIAVWQNFKEVILDEEEDLFKKILETYKGFEAISTLVDVGGGIKHVGGNMFQCVPEGDAITIKKGGKLIIIDLIMTELPKLSDGDKYVSILDNVMFLQAGGKERNEKEFEDLCKDAGFSRYEIAACVFSALGRAKHIKTKVKKGDSTDPKPNMGAATENCHHQNIKTLPMKEDDYDACLHAMLLCAGQVNAAVLNAAIKLNLFDIIAQSSPDGGFVSPSEIVSKLPQRIMQKHHTGLIASCVCLWLTLFSLVL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0913 379 Gene3D Vaccinia Virus protein VP39 188 252 IPR029063 -
Glsi12g0913 379 PANTHER O-METHYLTRANSFERASE 15 168 IPR016461 GO:0008168
Glsi12g0913 379 Pfam Dimerisation domain 319 356 IPR012967 GO:0046983
Glsi12g0913 379 Pfam Dimerisation domain 27 76 IPR012967 GO:0046983
Glsi12g0913 379 FunFam Caffeic acid 3-O-methyltransferase 1 106 - -
Glsi12g0913 379 Pfam O-methyltransferase domain 187 245 IPR001077 GO:0008171
Glsi12g0913 379 Gene3D - 284 364 IPR036388 -
Glsi12g0913 379 SUPERFAMILY "Winged helix" DNA-binding domain 299 354 IPR036390 -
Glsi12g0913 379 SUPERFAMILY "Winged helix" DNA-binding domain 7 110 IPR036390 -
Glsi12g0913 379 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 250 IPR029063 -
Glsi12g0913 379 Gene3D - 22 143 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0913 Glsi-ChrGlsi12 26825380 26829962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0913 10 254 Monolignol Biosynthesis Gene Families AT5G54160 35.799 2.30e-46 160