Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0912 ATGGAAAGAGCAGGCGACGGAAATGGGACGATCGACTTTGATGCATTGCCCGAACACTCTATCGCTAACATACTTTCATTCACGACTCCTGTGGATGCGTGCAGGATGTCCCTGGTTTCCAAAATTTTCCTTTCCGCCGCCGATTCCGACACCGTCTGGGACTGTTTCCTCCCTTGCGATTCTCTCTCTCTGATTTCTCAATTCCCTTGGTCTTCCTTTCCTTCAAAGAAGGCCTTGTATCTGGCTCTTTTGGACCGCCCCATCATCATCGACCAGGGTTTAAAGAGCTTCCAATTGGAGCGCCGGGGTGGGAAGAAGTGTTACATGCTGTCTGCTAGAGATCTGTGCATTATAGGGGGTGATACTCCTCAGTATTGGCAATGGACAAGACTGCCTGAGTCCAGGTTCCAGCAAGTGGCTGAGCTTCTCGAATTGTGTCTGCTTGAAATTCATGGGAAGATAAAGACCAATAGGCTGTCCTCAAATACGCTGTATGGAGCTTATCTGGTGTACAAGATGGTGGAGGCTTATGGATTTGAAACCCATCCGGTGGAGCTGTCAGTGGGCATATATGGAGGAGATAGTTTTAGCAAAAAAGTGTGCTTAGACCCAAACATAGAAGAGAGGAGCTTGGAGCCCGGCTTTTGGGGATTGGAACGTCCAAAGGAGAGAAGGAACGGGTGGTTGGAGATTGAGATGGGGGAGTTTATGAATTCCAATTCCGCGGTAGAAGATGAACAAGTGGAGATGAGTCTTATGGAAGTCATGGGCGGTTATTGGAAGCACGGCCTCATTGTTGAAGGAATAGAAATTGGATACATCCCTTTCGATCTTTGGGCGGCTTCTGGGGCTGCACCGCCAATATTGATTAGTTCTGACTTAATTGATATGAGATTGGTTTTGCTTTTTGCTCTGAATTTGTATATAAAGTCTTATGAGTGCCTTTTGAAGCTTCTGAACTTCATAATGACCCTTGTTGGTCTGAACTTCATAAAGTTGGAGCTCCTTGCCGTGTTGATTAACAAGGGTACTGTAGAAATTATCACCCCTGTGGAACTCATTAGAAAGGGTGATAAGGTTGGCTCTTTTGAAGCTGCTTTGCTTGCAAAACTTGGGATTAGGCCCTTCTCATATGGGCTTGTTGAAAATATGCTTAGCATTTTTCGATATGCTGAGAAGATGGAGGAGAAGTTCAAGAAGCAGGCTGCTAGCACTACTTCTAATGACCATGTCATGAAGGTAGCTGGTGAAGCTATGGTTGTAATGACTGATTCAACTGTCACTTCCAGGCCATTACAGGCTCATGTTGACAACAAAGTCTATCCCGCAGTTCTAAATGCAGCCATTGAACTAAACTTGTTTGATATCATAGCCAAGAAGGCAAACCCACCTGGTTCTTTTATGTCTGCCCATGAAATTGCTTCCCACCTTCCTTCCCAGCACCCCGATATGCCCGACCGCCTCGAACGGATGCTCCGGTTGCTCGCTAGTTACACTCTCCTCTCTAGCTCCTCTCGTACCAACGAAGAAGATGGAAGCTCCGTCACCGTTTATGGCCTCTCGCTGGCTGGAAAATACTGTGTCCCTAATGAAAATGAGGGCTACTTGGCTTCCTTCACCACCTTTCTCTGTCATAAAGCATTACTGGAGATTTGTTTTATAATGATGTTATCTGAAATTCCCAGGATGAATTTCAAGGACGCGGTAGTTGATCCAGACATTGACCTGTTCAAGAAAGTTCATGGGCTAACAAGTTACCAGTACTTCGGGACACATCCTAAACTGAACAACATATTCAACAAAGCAATGAAGGATGTGTGTGCAACGGAGATGAACAGGGTGCTTGAGTTGTACACTGGTTTTGAGGGAGTATCAACGTTGGTTGATGTCGGTGGAGGAACTGGTCAAAACCTTAAATTGATCGTCTCCAAATATCCTTCCATTAAAGGCATTAACTTTGATCTCCCCCAAGTCATAGAAACTGCACCACCCATTCCTGGGATTGAGCATATTGGAGGAGACATGTTTGCAAGTGTTCCTGAGGGCGATGCCATAATATTAAAGGCCGTGTGCCATAACTGGTCAGATGAAAAATGCATAGAATTTCTGAGCAAGTGTCACGAAGCATTGCCAGAAAATGGGAAGGTGATAGTGGTGGAGTTCATATTACCAGAATCACCAGAGGCTACTGAAGCTTCAAAATTGGTTTCAACTCTGGACAACCTCATGTTCATCACAGTGGGAGGAAGAGAAAGAACTGAGAAACAGTTTGAGAGCTTGGGAAAGCGTTCTGGGTTTTCTAGGTTCCAAGTTGCTTGCCGAGCTTTCTCTGCTTTGGGAGTCATGGAGTTTTATAAATAA 2361 0.4528 MERAGDGNGTIDFDALPEHSIANILSFTTPVDACRMSLVSKIFLSAADSDTVWDCFLPCDSLSLISQFPWSSFPSKKALYLALLDRPIIIDQGLKSFQLERRGGKKCYMLSARDLCIIGGDTPQYWQWTRLPESRFQQVAELLELCLLEIHGKIKTNRLSSNTLYGAYLVYKMVEAYGFETHPVELSVGIYGGDSFSKKVCLDPNIEERSLEPGFWGLERPKERRNGWLEIEMGEFMNSNSAVEDEQVEMSLMEVMGGYWKHGLIVEGIEIGYIPFDLWAASGAAPPILISSDLIDMRLVLLFALNLYIKSYECLLKLLNFIMTLVGLNFIKLELLAVLINKGTVEIITPVELIRKGDKVGSFEAALLAKLGIRPFSYGLVENMLSIFRYAEKMEEKFKKQAASTTSNDHVMKVAGEAMVVMTDSTVTSRPLQAHVDNKVYPAVLNAAIELNLFDIIAKKANPPGSFMSAHEIASHLPSQHPDMPDRLERMLRLLASYTLLSSSSRTNEEDGSSVTVYGLSLAGKYCVPNENEGYLASFTTFLCHKALLEICFIMMLSEIPRMNFKDAVVDPDIDLFKKVHGLTSYQYFGTHPKLNNIFNKAMKDVCATEMNRVLELYTGFEGVSTLVDVGGGTGQNLKLIVSKYPSIKGINFDLPQVIETAPPIPGIEHIGGDMFASVPEGDAIILKAVCHNWSDEKCIEFLSKCHEALPENGKVIVVEFILPESPEATEASKLVSTLDNLMFITVGGRERTEKQFESLGKRSGFSRFQVACRAFSALGVMEFYK 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0912 786 SUPERFAMILY "Winged helix" DNA-binding domain 435 531 IPR036390 -
Glsi12g0912 786 Gene3D - 338 378 IPR043164 -
Glsi12g0912 786 FunFam Caffeic acid 3-O-methyltransferase 417 527 - -
Glsi12g0912 786 PANTHER O-METHYLTRANSFERASE 428 776 IPR016461 GO:0008168
Glsi12g0912 786 Pfam F-box domain 13 53 IPR001810 GO:0005515
Glsi12g0912 786 Pfam Dimerisation domain 444 496 IPR012967 GO:0046983
Glsi12g0912 786 SUPERFAMILY F-box domain 5 80 IPR036047 GO:0005515
Glsi12g0912 786 CDD AdoMet_MTases 626 723 - -
Glsi12g0912 786 Pfam O-methyltransferase domain 565 767 IPR001077 GO:0008171
Glsi12g0912 786 FunFam Caffeic acid O-methyltransferase 530 786 - -
Glsi12g0912 786 Gene3D Vaccinia Virus protein VP39 596 775 IPR029063 -
Glsi12g0912 786 ProSiteProfiles F-box domain profile. 10 56 IPR001810 GO:0005515
Glsi12g0912 786 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 567 782 IPR029063 -
Glsi12g0912 786 CDD F-box_AtSKIP3-like 13 58 - -
Glsi12g0912 786 Gene3D - 440 614 IPR036388 -
Glsi12g0912 786 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 433 786 IPR016461 GO:0008168
Glsi12g0912 786 Pfam Phloem protein 2 105 271 IPR025886 -
Glsi12g0912 786 SMART fbox_2 16 56 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0912 Glsi-ChrGlsi12 26778231 26796853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0912 440 776 Monolignol Biosynthesis Gene Families AT5G54160 47.929 7.85e-104 322