Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0897 ATGAAGAAGCATAGCATAGCATCAAATTCTTCTTCAACAAAAACCATTTCTGTCTTGCCATATCAAACCCCTAGACTTAGAGACCACTACCTTCTTGGCAAGAAACTAGGCCAGGGCCAATTTGGCACCACCTACCTCTGCACCCAGAAATCCACAGGGAAGCTTTATGCCTGCAAATCCATCCCTAAGCGGAAGCTTCTGTGCAAGGAAGATTACGATGATGTGTGGAGGGAGATTCAGATCATGCATCATTTGTCCGAGCACCCAAATGTGGTTCAAATACAAGGAACGTACGAGGATTCTGTGTTTGTACACTTAGTTATGGAGCTTTGCGCTGGGGGTGAGCTTTTTGATAGGATCATTCAGAAGGGGCATTATAGCGAGAGAGAAGCGGTCAAGTTGATAAAGACCATTGTTGGGGTAGTGGAAGCCTGTCACTCTCTTGGGGTCATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATAATCATAGTGAAGATGCCAAGATGAAGGCTACAGATTTTGGGTTGTCCGTATTTTACAAGCCAGGACAAGCCTTTTGTGATGTGGTTGGAAGTCCTTATTATGTTGCCCCTGAGGTGTTGTGCAAGCATTATGGACCAGAAGTGGATGTGTGGAGTGCCGGTGTTATCCTTTACATCTTATTGAGTGGGGTCCCACCATTTTGGGCTGAAAGTGAGTCAGGAATTTTTAGACAGATTTTAAACGGAAAGTTAGATTTTGACTCTGAACCATGGCCAAGCATCTCAGAAAGTGCTAAAGATTTGGTAAAACAGATGCTTGAGAGGGACCCTAAGAAAAGAATTTCTGCTCATGAAGTCTTATGTCACCCTTGGATTGTTGATGATAAAGTTGCCCCAGACAAACCTCTGGATTCTGCAGTTTTGTCAAGGCTGAAGCATTTCTCAGCAATGAATAAACTTAAGAAGATGGCACTACGTGTCATAGCAGAAAGACTTTCGGAGGAAGAAATTGGTGGTTTAAAAGAGTTATTTAAAATGATTGACACAGACAACAGTGGAACAATAACATTTGAGGAACTCAAAGAAGGTCTGAAGAGAGTGGGTTCTGATCTAATGGAATCTGATATTAAATCCCTCATGGAAGCGGCTGATATAGACAACAGTGGAACAATAGACTATGGTGAATTTCTTGCTGCTACACTGCACTTGAATAAGATGGAAAGAGAGGAAAATTTGGTTGCAGCCTTTTCCTATTTTGATAAAGATGGTAGTGGTTACATCACCATTGATGAGCTTCAACAGGCTTGTCAAGATTTTGGCCTAGGTGACGTACATTTAGATGAAACGATCAAAGAGATTGATCTAGACAACGATGGGAAAATCGATTACGGGGAGTTTGCAGCGATGATGAAGCAGGGTGAGGGAGGAGTTGGTAGGAGCAGAACCATGAAAGGCAATTTAAACTTCAGTTTAGCTGATGCCTTCGGAGTAAAAGACTAA 1488 0.4241 MKKHSIASNSSSTKTISVLPYQTPRLRDHYLLGKKLGQGQFGTTYLCTQKSTGKLYACKSIPKRKLLCKEDYDDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEREAVKLIKTIVGVVEACHSLGVMHRDLKPENFLFDNHSEDAKMKATDFGLSVFYKPGQAFCDVVGSPYYVAPEVLCKHYGPEVDVWSAGVILYILLSGVPPFWAESESGIFRQILNGKLDFDSEPWPSISESAKDLVKQMLERDPKKRISAHEVLCHPWIVDDKVAPDKPLDSAVLSRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKEGLKRVGSDLMESDIKSLMEAADIDNSGTIDYGEFLAATLHLNKMEREENLVAAFSYFDKDGSGYITIDELQQACQDFGLGDVHLDETIKEIDLDNDGKIDYGEFAAMMKQGEGGVGRSRTMKGNLNFSLADAFGVKD 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0897 495 FunFam Calcium-dependent protein kinase SK5 116 300 - -
Glsi12g0897 495 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Glsi12g0897 495 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Glsi12g0897 495 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Glsi12g0897 495 SUPERFAMILY Protein kinase-like (PK-like) 10 311 IPR011009 -
Glsi12g0897 495 CDD STKc_CAMK 29 287 - -
Glsi12g0897 495 Gene3D Transferase(Phosphotransferase) domain 1 116 299 - -
Glsi12g0897 495 CDD EFh 336 395 IPR002048 GO:0005509
Glsi12g0897 495 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 462 - -
Glsi12g0897 495 Gene3D Phosphorylase Kinase; domain 1 31 115 - -
Glsi12g0897 495 ProSiteProfiles Protein kinase domain profile. 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0897 495 Gene3D - 300 469 - -
Glsi12g0897 495 SMART efh_1 371 399 IPR002048 GO:0005509
Glsi12g0897 495 SMART efh_1 441 469 IPR002048 GO:0005509
Glsi12g0897 495 SMART efh_1 335 363 IPR002048 GO:0005509
Glsi12g0897 495 SMART efh_1 407 435 IPR002048 GO:0005509
Glsi12g0897 495 SMART serkin_6 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0897 495 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509
Glsi12g0897 495 SUPERFAMILY EF-hand 327 466 IPR011992 -
Glsi12g0897 495 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Glsi12g0897 495 ProSiteProfiles EF-hand calcium-binding domain profile. 331 366 IPR002048 GO:0005509
Glsi12g0897 495 Pfam EF-hand domain pair 406 467 IPR002048 GO:0005509
Glsi12g0897 495 Pfam EF-hand domain pair 336 396 IPR002048 GO:0005509
Glsi12g0897 495 FunFam Calcium-dependent protein kinase 1 296 470 - -
Glsi12g0897 495 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Glsi12g0897 495 FunFam Calcium-dependent protein kinase 1 32 115 - -
Glsi12g0897 495 CDD EFh 408 467 IPR002048 GO:0005509
Glsi12g0897 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Glsi12g0897 495 ProSiteProfiles EF-hand calcium-binding domain profile. 441 472 IPR002048 GO:0005509
Glsi12g0897 495 Pfam Protein kinase domain 32 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0897 495 ProSitePatterns EF-hand calcium-binding domain. 344 356 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0897 Glsi-ChrGlsi12 26666652 26673770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0897 17 493 EF-hand Containing Proteins AT1G35670 85.325 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi12g0897 Pkinase 3.3e-77 CL0016