Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0893 ATGCCAACTCCCGCGCCAACAGCTGCGTTTGGTGGTGCAGAAACTCCCAGTGGCGACTCCTCCCAAACTACCGCCCCTCCCAAACACGACCCTCGGGATTCGCGTGACCGTCTCCCTCCGTTATTCGCTTCCTCTTATCCAATTACTCTCAAGTTCGTGGACGTGGGATACCGAGTAAAAATAGATAACAAGCAAGGAGGGAGCATAAAGCGTATGTTTACTACTAATGGTTCGGCACCGTCTGACCGGGGATCAACGGTGGCGACGACGATGCAAGAAAGAACCATATTGAATGGGGTGACGGGGATGGTGTCTCCGGGAGAGATACTAGCAATCCTGGGCCCATCAGGGAGCGGCAAATCAACGCTTCTAAACGCGGTTGCAGGAAGACTCCAAGGACACGGCCTCACAGGAACGATCCTCGCCAACGGAGCCAAACTCGGTAAAACCGTTCTTCGTCGAACCGGGTTCGTGACTCAGGACGACATTCTCTACCCTCACCTCACCGTGCGCGAGACCTTGATCTTCTGCTCCTTCCTTCGCCTCCCCAAGACCATCTCCAAGAAGGAGAAGATTTCCGTGGCTGACTCGGTGATCGCCGAGCTGGGTCTGGTGAAATGCGAGAACACCATCATTGGGAACAGCTTTATTCGTGGGGTTTCTGGTGGGGAGCGGAAGCGAGTCAGTATAGCCCACGAGATGCTGATCAACCCGAGCTTGTTGATCCTGGACGAACCCACTTCGGGGTTGGACTCCACGGCGGCGCATCGGCTCGTGACTACGCTTGGGTCGCTGGCGCAGAAGGGGAAGACGGTGGTAACGTCCATGCACCAGCCGTCCAGCCGCGTCTACCAGATGTTTGATGCCGTGCTTGTGTTATCAGAAGGGCAGTGTTTGTATTTCGGCAAGGGGTCCCGAGCCATGAGCTACTTTGAGTCGATTGGGTTCACGCCGTCTTTCCCAATGAACCCCGCGGATTTTCTGCTTGATCTCGCAAACGATTTACAGAATCTGTATGTATGCATTGGTTGTGATATTGTGGGTTTGGAAATAGAATATGGGCATGATGGGCGAGTCGTGGGATACTTTACTCAGTTTTCTCAACTGGACACTTTAGTTTATTCAATTCATAAGGATTGCAATTGCATTATTGAAGTGGGCAGCTATAGAACGAACTCTTTAACTCAAAGAATACATTGTGTTTGCCAAGTTGATGGTCTAAGTGAAAGAAATAGGCCTAACATAAAGCAATATCTAGTTCATTCATACAACACAGAACTAGCTCCCAAGGTAAAAGCTGCCTGCATGGACACTGCCAACGTTCCTACAAAAAATACTCATTCCTTGGAAATCAGCTCTTCCAAAGAACATAGATATAGTGACAGAATTAGCTTCTCTAATTGGTTCAATCAATTTAGCATTCTCCTCCAAAGAAGCCTCAAAGAAAGAAAGCATGAATCATTTAACACACTGAGAGTCTTCCAAGTTACTGCTGCTGCACTATTAGCTGGTTTAATGTGGTGGCACTCAGACTATAGGGATATTCAAGACAGGCTTGGCCTACTCTTCTTTATTTCCATCTTTTGGGGAGTCTTCCCATCGTTCAACTCAGTTTTTGCATTTCCTCAAGAACGTGCCATCTTCTTGAAAGAGAGGGCTTCTGGTATGTACACGCTGTCTTCTTATTTCATGGCTCGAATTGTTGGAGACCTGCCGATGGAGCTCATTCTTCCCACAGTTTTCCTCATTGTCACATACTGGATGGGTGGATTAAAGCCTGACTTGTGGGCTTTTATCTTGACTCTGCTGGTGATTCTAGGATACGTGCTTGTGTCTCAGGGTCTTGGCCTTGCTTTAGGTGCAGCAATAATGGATGCCAAGCAGGCTTCCACAGTAGCAGCAGTAACAATGCTGGCATTTGTGTTAACAGGTGGATACTATGTGCACAAGGTGCCATCTTGTATGGCTTGGATTAAGTATATATCAACCACCTTTTACTGTTATAGGCTGCTGATCAATATCCAGTATGGTGATGGAGAGAAAATCTCATATTTACTTGGCTGCTCTCATGGTGGTACTGGTAGTGATAGGGCTAGCTGCAAGTTTGTTAAGGAAGATGTGGTGGGGCAAATCAACCCTTTAGGAAGCATTGGTGTTTTGTTTCTCATGTTTGTGGGTTACAGATTGCTGGCTTACCTTGCCTTGAGGCGCATCAAGAGTTGA 2223 0.4795 MPTPAPTAAFGGAETPSGDSSQTTAPPKHDPRDSRDRLPPLFASSYPITLKFVDVGYRVKIDNKQGGSIKRMFTTNGSAPSDRGSTVATTMQERTILNGVTGMVSPGEILAILGPSGSGKSTLLNAVAGRLQGHGLTGTILANGAKLGKTVLRRTGFVTQDDILYPHLTVRETLIFCSFLRLPKTISKKEKISVADSVIAELGLVKCENTIIGNSFIRGVSGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAHRLVTTLGSLAQKGKTVVTSMHQPSSRVYQMFDAVLVLSEGQCLYFGKGSRAMSYFESIGFTPSFPMNPADFLLDLANDLQNLYVCIGCDIVGLEIEYGHDGRVVGYFTQFSQLDTLVYSIHKDCNCIIEVGSYRTNSLTQRIHCVCQVDGLSERNRPNIKQYLVHSYNTELAPKVKAACMDTANVPTKNTHSLEISSSKEHRYSDRISFSNWFNQFSILLQRSLKERKHESFNTLRVFQVTAAALLAGLMWWHSDYRDIQDRLGLLFFISIFWGVFPSFNSVFAFPQERAIFLKERASGMYTLSSYFMARIVGDLPMELILPTVFLIVTYWMGGLKPDLWAFILTLLVILGYVLVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHKVPSCMAWIKYISTTFYCYRLLINIQYGDGEKISYLLGCSHGGTGSDRASCKFVKEDVVGQINPLGSIGVLFLMFVGYRLLAYLALRRIKS 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0893 740 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 82 320 IPR003439 GO:0005524
Glsi12g0893 740 Pfam ABC transporter 97 248 IPR003439 GO:0005524
Glsi12g0893 740 CDD ABCG_EPDR 94 302 - -
Glsi12g0893 740 SMART AAA_5 106 297 IPR003593 GO:0016887
Glsi12g0893 740 Pfam ABC-2 type transporter 471 676 IPR013525 GO:0016020|GO:0140359
Glsi12g0893 740 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 30 732 - -
Glsi12g0893 740 FunFam ABC transporter G family member 22 85 314 - -
Glsi12g0893 740 Pfam ABC-2 type transporter 277 335 IPR043926 GO:0140359
Glsi12g0893 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 314 IPR027417 -
Glsi12g0893 740 Gene3D - 85 314 IPR027417 -
Glsi12g0893 740 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0893 Glsi-ChrGlsi12 26629591 26636145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0893 96 333 Calmodulin-binding Proteins AT2G36910 28.099 1.38e-13 72.8