Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0890 ATGAATCTTCTCGTGTCTTTCTTCTCTGTGATGGCTGTATGCTATATGGCGTCGGCTAAGGTGGTGGTGATTGGGAGCAACGTTACTCTCTCCTTCGACGATATTGAAGCTAATTTTGCTCCAACGATTAAAGGTTCTGGAGAATGTGGGGTCTTGTATATGGCAGAGCCGCCTGATGCTTGTACAGAACTGACAAATAAAGCTGAGCAGTTTTCAAATGCAAGTTCCCCTTTTGTTTTAACAATTAGAGGGGGATGTGGCTTTGAAGAAAAGGTTAGAAGAGCACAAAGGGCTGGCTTCAAAGCTGCAATTGTATATGACAATGAAGAGGATGGTGTCCTAGTTGCAATGGCAGGAAATTCAGCTGGTATAAGAATACATGCTGTATTTGTATCCAAAGCTTCGGGTGAAATACTAAAGAAATACACTGGACTGACTAATGTTGAACTGTGGCTAATTCCAAGTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTCATTTCCCTACTAGCAATGTCAGCAGTTCTGGCCACTTGTTTCTTCGTCCGCAGGCATCGCATACGAAGAGAAAGGCCTCAAGCTTCTCACGTTCGTGAATTTCATGGGATGAGTAGCCGCTTGGTGAAAGCAATGCCTAGTTTGATATTTACTGCTGTTTTAGAGGATAACTGTACATCAAGAACATGTGCAATATGCCTTGAAGACTATTGCGTTGGAGAGAAGCTCAGGATTCTTCCCTGCTGCCACAAGTTTCACGCCATCTGTGTGGATTCTTGGCTTACTTCCTGGAGAACATTTTGTCCAGTTTGTAAGCGTGATGCAAGAACTGGTCTAACTGATCCCCCACCTTCGGAATCCACACCATTGCTTTCATCCGGCCAAGCATCTGTGGCATCCTCTGTATTATCATCCATGAGATCATCATTAGCATCATCTTCAGCAATACAAATTACCCGGGCTACATCACGGTCCCCATCTGTTTCTCGTAACCACTCTTTGGCTAGTACTCCATACTTTCAGCCATCTCTTAGGTCCTACCACCAATCCCCTTCCCTAAGCATTAGCCGAAGCTCAGTAGATCTTAGGAATGCATCCCAAAGATCTCAAGCTTCTCATTTGAATTCTCCGCGTTCCATGGGTTACCCATCTTTGTCATCTATGAACTTAAGGTACATGTCTCCACATATTCAAAGTCCAAGCTATGCTTCAGCAAGTTATATGGGCTCTTCTAGTCATCGGCAGCACCCACTTCGTTATAGTGAATCAGCTGCAAGTTTTTCTCCATTTGCTTCTGCCAACTCCCTACCAGAATGCTGA 1323 0.4399 MNLLVSFFSVMAVCYMASAKVVVIGSNVTLSFDDIEANFAPTIKGSGECGVLYMAEPPDACTELTNKAEQFSNASSPFVLTIRGGCGFEEKVRRAQRAGFKAAIVYDNEEDGVLVAMAGNSAGIRIHAVFVSKASGEILKKYTGLTNVELWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQASHVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAICVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSGQASVASSVLSSMRSSLASSSAIQITRATSRSPSVSRNHSLASTPYFQPSLRSYHQSPSLSISRSSVDLRNASQRSQASHLNSPRSMGYPSLSSMNLRYMSPHIQSPSYASASYMGSSSHRQHPLRYSESAASFSPFASANSLPEC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0890 440 ProSiteProfiles Zinc finger RING-type profile. 231 273 IPR001841 -
Glsi12g0890 440 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 19 153 - -
Glsi12g0890 440 CDD PA_C_RZF_like 10 160 IPR044744 -
Glsi12g0890 440 Gene3D - 18 152 - -
Glsi12g0890 440 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 191 278 - -
Glsi12g0890 440 SUPERFAMILY RING/U-box 221 284 - -
Glsi12g0890 440 SUPERFAMILY PA domain 77 142 IPR046450 -
Glsi12g0890 440 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 155 288 - -
Glsi12g0890 440 Pfam PA domain 58 139 IPR003137 -
Glsi12g0890 440 MobiDBLite consensus disorder prediction 356 381 - -
Glsi12g0890 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 278 IPR013083 -
Glsi12g0890 440 SMART ring_2 231 272 IPR001841 -
Glsi12g0890 440 Pfam Ring finger domain 230 273 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0890 Glsi-ChrGlsi12 26591089 26598256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0890 18 439 C3H Transcription Factor Family AT1G22670 47.086 2.12e-113 338