Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0883 ATGTCTGGCAGGTCAAGTTGTACTGTTTATATAGGCAATCTGGATGAGAGGGTGACTGATAGGGTCTTGTATGATATTCTAATTCAAGCGGGACGATTGGTGGACTTATATATTCCTAGAGATAAGGAATCTGAGAGACCCAAAGGATTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCCGTGAGGCTTTTCTCAGGCCTTGTTACGCTCTATAACAGAACACTGAAGTTTGCGATATCTGGGCAAGACAAAGCTACCCCAAATGGTTCCACCGCAGCTACCCCTACATCAAATTCTCATCATCGATCTAGGCCCTACCCTTTGCCAAAAAATAGTACAGAATTTTCTCAGCACTCTGCTAAGCCTTCAACACCAAGCCGATTTTCAGATTACCCTGTAAATTACTCCCGAGTTAACCATCGTGTAGTTGACCAACATTGGGCCAACGATGGCAACAATTATGAATACAGTCGCAGATCCTCTGGGCCAACATCGGATAGCATTAGCCGTTCTAGGTCACGCCGCTATGACACAAGAAACCCAATCTCTTTTCCATCTTATTGA 576 0.441 MSGRSSCTVYIGNLDERVTDRVLYDILIQAGRLVDLYIPRDKESERPKGFAFAEYETEEIADYAVRLFSGLVTLYNRTLKFAISGQDKATPNGSTAATPTSNSHHRSRPYPLPKNSTEFSQHSAKPSTPSRFSDYPVNYSRVNHRVVDQHWANDGNNYEYSRRSSGPTSDSISRSRSRRYDTRNPISFPSY 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0883 191 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Glsi12g0883 191 MobiDBLite consensus disorder prediction 154 173 - -
Glsi12g0883 191 MobiDBLite consensus disorder prediction 86 136 - -
Glsi12g0883 191 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 187 - -
Glsi12g0883 191 MobiDBLite consensus disorder prediction 148 191 - -
Glsi12g0883 191 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Glsi12g0883 191 Gene3D - 2 94 IPR012677 -
Glsi12g0883 191 SMART rrm1_1 8 82 IPR000504 GO:0003723
Glsi12g0883 191 SUPERFAMILY RNA-binding domain, RBD 4 81 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0883 Glsi-ChrGlsi12 26531122 26533416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0883 4 89 Eukaryotic Initiation Factors Gene Family AT1G49760 27.907 1.92e-06 45.4