Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0872 ATGGGGAGGAAAGGGACTTGGTTTTCTGCAGTGAAGAAAGTTCTCAGTCCCGATTACAAGAAAGATCAGAAAAAACAAAAGTCAAAGAATAAATGGTTTGGCTGTTTGGCATATGAAGAAGCACCATTTGCCGTTTCTCCCTCTCTTCCACCTGAAGAAGATATTAAATTAACCGAGGAAGAGAATGAGCAGAACAAGCATGCTTATTCAGTGGCTCTTGCCAATGCTGTTGCTGCAGAGGCTATTGTTGCCGCAGAGGCTGCTGTGGCTGCTGCTCAGGCTGCGGCAGAGGTTGTTCGTCTCACTAGTGTGCCTTATTACCATGGAAAGTCAAAGGAAGAACTAGCAGCTATCAAGATTCAGACAGCATTCCGAGGATATTTGGCAAGAAGAGCATTGCGTGGCTTGAGAGGTTTGGTGAGGTTGAAGACATTGATACAAGGGCAATATGTTAAACGGCAAGCAGCTTCTACCTTACAATGCCTGCAGACTGTTGCACGACTGCAGTCTCAGATTCGTGAGAGGAGGGCTAGAATGTCTGAGGAAAACCAGGTTCTTCAGGGGCAGCTGCAGCAGAAACATGAAAAAGAACTTGAGAAGTTGCAAGCTGCTCAGACTGGAGAAGAATGGGATGATAGCACACAATCAAAGGAGCAAATTAAAGCAAAACTGTTGCACAGGCACGAAGCTGCAAGGAGAAGAGAAAGAGCTTTGGCTTATGCATTCTCACATCAGGTAGCAGACTACCGTTTTCTACAGTTTTGTAGTTTGGATTATAATGGAACAGAGAAACAAATTTCTTGGCCTTTATGTGTTCGAACAATTTTTGTGCTTGGTGACTGCGGAACTTATGGTTCTGTAATGTGCAGAATGAAACAGAAGAAACTCATGACTTGGAATTTGTTTCAAACATCAAAACAAATGAAAATGCATCAAGCGAGGAAGAACTTTTCAAAATCTGAAAACCCCACATTCATGGATCCAAACAATCCCCATTGGGGTTGGAGTTGGGGAGAGCGATGGATGATATCACGGCCGTGGGAGAGCCAAAGCACTATGGATCACAATGACCGTGCATCTGTAAAGAGTGTGGCAAGCCAAGCCATGTCTGGTGGGGGAGTCACCAAATTGTATTCTATTGGTGATCATAATCACAATAACAAGTCTTCCCCTGCTGGCCAAAAATCAAGCAGACCTCCCACTCACCTGTCCCCCTCAACACCAGCTACAAAGGCCCCATCTTTGCCATCTACCAGTGGTAAAGTAAGGTCAAGAAGCCCAAAGGGAGGTTCCTGGGGTGGCGATGATGACTCGAGGAGCATGTTAAGCACTCAGTCAGAACGATACCGTAGGTATACCATTTCAGGATCATCGATGAGAGATGACGAGAGCCTCACAAGCTCTGCTGCATTTCCAAGTAAAATGATACCCACAAGGTCAGCAAAGGCCAAGTCCAGATTGCAAAGTCCATCATCAGCTGGTAAAGATAAGAAAGGAACACCTGAAAAGGGATATGTTGTTTCTGCGAAGAAGCGGCTTTCCTTCCCAGCTTCTCCAGCTGGTTCAAGGAAGCATTCTGGTCCTCCTAAGGTGGATTCTGTTTCAAATAAGGATGATGTTACAGTCACCGATGAGAAAGTTAGCAATGGTGGCAGGATTGGATTGGGGAACCAGAAGCGTCCAGAAGTTCTGAATGAGGCTCCAAAGATTCTTCCCAATCTTTCAGGTTTCGTGAGGATGGCTACACCATTTCTGGCTGGCCTTGCTGTGGCTGGTGCAGCTCTTGCTGGTAGGTATGGCATCCAAGCTTGGCAAGCATTCAAGGCACGGCCCCTAAAATCCAAAATACGAAAGTTCTATGAAGGTGGTTTCCAGCCGACTATGACGAGAAGAGAAGCAGCTCTAATTTTGGGTATTAGGGAAAATGCAACTCCAGACAAGGTGAAGGAAGCACATAGGAGGGTAATGGTAGCAAACCATCCGGATGCAGGTGGCAGTCATTATCTTGCTTCCAAAATTAATGAGGCAAAAGATGTTATGCTCGGGAAGACAAAAAGTAGTGGATCTGCATTTTAA 2076 0.4552 MGRKGTWFSAVKKVLSPDYKKDQKKQKSKNKWFGCLAYEEAPFAVSPSLPPEEDIKLTEEENEQNKHAYSVALANAVAAEAIVAAEAAVAAAQAAAEVVRLTSVPYYHGKSKEELAAIKIQTAFRGYLARRALRGLRGLVRLKTLIQGQYVKRQAASTLQCLQTVARLQSQIRERRARMSEENQVLQGQLQQKHEKELEKLQAAQTGEEWDDSTQSKEQIKAKLLHRHEAARRRERALAYAFSHQVADYRFLQFCSLDYNGTEKQISWPLCVRTIFVLGDCGTYGSVMCRMKQKKLMTWNLFQTSKQMKMHQARKNFSKSENPTFMDPNNPHWGWSWGERWMISRPWESQSTMDHNDRASVKSVASQAMSGGGVTKLYSIGDHNHNNKSSPAGQKSSRPPTHLSPSTPATKAPSLPSTSGKVRSRSPKGGSWGGDDDSRSMLSTQSERYRRYTISGSSMRDDESLTSSAAFPSKMIPTRSAKAKSRLQSPSSAGKDKKGTPEKGYVVSAKKRLSFPASPAGSRKHSGPPKVDSVSNKDDVTVTDEKVSNGGRIGLGNQKRPEVLNEAPKILPNLSGFVRMATPFLAGLAVAGAALAGRYGIQAWQAFKARPLKSKIRKFYEGGFQPTMTRREAALILGIRENATPDKVKEAHRRVMVANHPDAGGSHYLASKINEAKDVMLGKTKSSGSAF 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0872 691 ProSiteProfiles IQ motif profile. 113 141 IPR000048 GO:0005515
Glsi12g0872 691 MobiDBLite consensus disorder prediction 437 474 - -
Glsi12g0872 691 SMART dnaj_3 631 685 IPR001623 -
Glsi12g0872 691 PANTHER IQ-DOMAIN 5-RELATED 1 521 - -
Glsi12g0872 691 Gene3D DnaJ domain 618 685 IPR036869 -
Glsi12g0872 691 MobiDBLite consensus disorder prediction 374 537 - -
Glsi12g0872 691 CDD DnaJ 636 679 IPR001623 -
Glsi12g0872 691 SMART iq_5 112 134 IPR000048 GO:0005515
Glsi12g0872 691 Pfam IQ calmodulin-binding motif 116 134 IPR000048 GO:0005515
Glsi12g0872 691 FunFam Import inner membrane translocase subunit tim14 618 684 - -
Glsi12g0872 691 Coils Coil 176 196 - -
Glsi12g0872 691 MobiDBLite consensus disorder prediction 380 425 - -
Glsi12g0872 691 ProSiteProfiles dnaJ domain profile. 632 685 IPR001623 -
Glsi12g0872 691 SUPERFAMILY Chaperone J-domain 622 683 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0872 Glsi-ChrGlsi12 26406160 26414640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0872 1 542 IQD Protein Family AT3G52290 41.622 1.18e-86 277