Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0867 ATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGAATTACAATCGATATTGCACTTTGGAAATTTGAGACCACCAAGTATTACTGCACTGTCATTGATGCCCCCGGACATAGGGATTTTATCAAGAACATGATTACTGGGACATCTCAGGCTGACTGTGCTGTTCTTATCATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGACAGACTCGTGAGCATGCTCTCCTTGCTTTCACCCTTGGTGTCAAGCAGATGATTTGCTGCTGCAACAAGATGGACGCCACTACCCCCAAGTACTCCAAGGCCAGATATGATGAAATTGTGAAGGAAGTTTCTTCCTATTTGAAGAAAGTGGGTTACAACCCAGATAAGATTCCTTTCGTTCCCATCTCTGGGTTTGAGGGAGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACCCTTCTTGAGGCCCTTGACCAGATCCAGGAGCCCAAGAGACCCTCAGACAAGCCTCTAAGGTTGCCACTTCAGGATGTTTACAAGATTGGAGGAATTGGCACTGTCCCTGTGGGGCGTGTTGAGACTGGTGTCTTGAAGCCCGGTATGGTGGTGACTTTTGGTCCTACTGGACTGACAACTGAAGTTAAGTCTGTGGAGATGCACCACGAGGCTCTCCAGGAGGCCCTTCCAGGTGATAATGTCGGATTCAACGTTAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTTGTTGCCTCAAATTCTAAGGACGACCCTGCCAAGGGGGCTGCCAGCTTCACATCCCAGGTTATCATTATGAATCATCCGGGCCAGATCGGGAATGGCTATGCCCCTGTGCTTGACTGCCACACTTCACACATTGCGGTTAAGTTTGCTGAACTTTTGACCAAGATTGACCGGCGATCTGGTAAAGAGCTTGAGAAGGAACCCAAATTCTTGAAGAATGGTGATGCTGGTATGGTTAAGATGATTCCGTCCAAGCCAATGGTGGTTGAAACTTTCTCTGAGTATCCTCCCCTTGGTCGTTTTGCTGTGAGGGACATGCGCCAAACTGTGGCTGTGGGAGTCATCAAGAGTGTGGATAAGAAGGAGGCTACGGGAGCCAAGGTCACCAAGGCTGCACAGAAGAAAGGCAAGTGA 1203 0.4846 MNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMIPSKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKEATGAKVTKAAQKKGK 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0867 400 FunFam Elongation factor 1-alpha 1 178 - -
Glsi12g0867 400 Pfam Elongation factor Tu C-terminal domain 274 381 IPR004160 -
Glsi12g0867 400 PRINTS GTP-binding elongation factor signature 20 28 IPR000795 GO:0003924|GO:0005525
Glsi12g0867 400 PRINTS GTP-binding elongation factor signature 40 50 IPR000795 GO:0003924|GO:0005525
Glsi12g0867 400 PRINTS GTP-binding elongation factor signature 100 109 IPR000795 GO:0003924|GO:0005525
Glsi12g0867 400 PRINTS GTP-binding elongation factor signature 56 67 IPR000795 GO:0003924|GO:0005525
Glsi12g0867 400 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 182 IPR000795 GO:0003924|GO:0005525
Glsi12g0867 400 CDD EF1_alpha 1 179 - -
Glsi12g0867 400 CDD EF1_alpha_II 182 272 - -
Glsi12g0867 400 PANTHER TRANSLATION FACTOR 1 385 - -
Glsi12g0867 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 201 IPR027417 -
Glsi12g0867 400 Gene3D Translation factors 275 382 - -
Glsi12g0867 400 CDD EF1_alpha_III 275 378 - -
Glsi12g0867 400 Gene3D Translation factors 181 268 - -
Glsi12g0867 400 SUPERFAMILY Translation proteins 183 273 IPR009000 -
Glsi12g0867 400 FunFam Elongation factor 1-alpha 275 382 - -
Glsi12g0867 400 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 13 28 IPR031157 -
Glsi12g0867 400 Pfam Elongation factor Tu domain 2 200 265 IPR004161 GO:0005525
Glsi12g0867 400 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 278 382 IPR009001 -
Glsi12g0867 400 FunFam Elongation factor 1-alpha 181 268 - -
Glsi12g0867 400 NCBIfam translation elongation factor EF-1 subunit alpha 3 385 IPR004539 GO:0003746|GO:0005525|GO:0006414
Glsi12g0867 400 Gene3D - 1 178 IPR027417 -
Glsi12g0867 400 Pfam Elongation factor Tu GTP binding domain 9 174 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0867 Glsi-ChrGlsi12 26343581 26344905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0867 1 392 Eukaryotic Initiation Factors Gene Family AT5G60390 95.918 0.0 789