Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0836 ATGGCGAAGGACGTTGAGGTTGCTGAGCGTGGGTCATACTCCTCCAAGGACTACCACGACCCACCTCCAGCGCCGCTCGTGGACGAGGAGGAGCTCACCAAGTGGTCCTTTTACAGGGCTTTGATAGCTGAGTTCATTGCCACTCTGCTTTTCCTCTACATTACTGTACTCACTGTTATTGGGTACAAGAGCCAGACTGACCCCAAGACTGGTGATGCTTGTGGTGGCGTTGGCATTCTTGGCATTGCTTGGGCCTTCGGTGGCATGATCTTTATCCTCGTTTACTGCACCGCTGGAATTTCAGGAGGACACATCAATCCAGCAGTGACATTTGGGCTCTTCCTGGCTCGCAAGGTGTCACTGATAAGAGCTATAATGTACATGGTGGCTCAGTGCTTGGGGGCTATCTGTGGAGTTGGGTTAGTGAAGGCCTTCCAAAAGGCTTACTACGCCAAGTATGGTGGTGGGGCCAATGAGCTTGCTGATGGGTACAGCACCGGCGTGGGTTTGGGCGCTGAGATCATCGGAACCTTTGTTTTGGTATACACTGTGTTCTCTGCTACTGATCCCAAGAGGAACGCTAGAGATTCCCATGTGCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACCATTCCAGTCACCGGCACTGGCATTAACCCGGCCAGGAGTCTTGGAGCTGCTGTCATCTACAACCAACAGAAAGCCTGGGATGACCATTGGATCTTCTGGGTTGGACCATTCATTGGGGCAGCCATTGCAGCTCTCTACCACCAATTCATCTTAAGGGCAGGTGCAGCCAAGGCTCTTGGATCATTCAGGAGCAACCCCACAGTTTGA 861 0.5238 MAKDVEVAERGSYSSKDYHDPPPAPLVDEEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKSQTDPKTGDACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKAYYAKYGGGANELADGYSTGVGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNQQKAWDDHWIFWVGPFIGAAIAALYHQFILRAGAAKALGSFRSNPTV 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0836 286 CDD MIP 39 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi12g0836 286 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi12g0836 286 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi12g0836 286 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi12g0836 286 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi12g0836 286 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi12g0836 286 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi12g0836 286 FunFam Probable aquaporin PIP1-2 24 284 - -
Glsi12g0836 286 SUPERFAMILY Aquaporin-like 31 270 IPR023271 -
Glsi12g0836 286 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi12g0836 286 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Glsi12g0836 286 Pfam Major intrinsic protein 31 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi12g0836 286 Gene3D Glycerol uptake facilitator protein. 24 286 IPR023271 -
Glsi12g0836 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 280 IPR034294 -
Glsi12g0836 286 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0836 Glsi-ChrGlsi12 25963938 25967319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0836 1 286 Major Intrinsic Protein MIP AT2G37170 82.578 2.73e-176 488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g0836 12 25963938 25967319 Glsi12g0836 12 25963938 25967319 ECH