Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0831 ATGGATTCCATGGAGAGGGTGTCAGAGAAGTGCTTAGATTCTCATTTATGGCATGCCTGTGCTGGTACCATGGTTCGAATGCCACCCATCAACTCAAAAGTCTTCTACTTTCCTCAGGGCCACGCAGAGCATGCCCATAGGAAAGTGGATTTTGGGCCAACTCGAATTCCCCCACTCATTCCCTGTAGGGTCTCTGGAATAAAATACATGGCAGACCCTGACACAGACGAGGTGTTTGTGAAAATGAGGCTGATCCCTCTGAGAGAAAATGATTTGGGTTTTGAAGATGATTGTTTCCTGGGAAACAATGGAGTTGAGAATCAAGAAAAGCCCGAATCCTTTGCAAAAACATTGACACAATCTGATGCAAATAACGGAGGAGGTTTTTCTGTGCCTCGTTACTGTGCTGAGACTATTTTTCCAAGGTTGGATTATTCTGCTGACCCTCCCGTTCAGACCATTATTGCCAAGGATGTGCATGGACAGAGCTGGAAGTTCAGGCATATCTATAGAGGGACCCCTCGCCGGCACCTTTTGACGACTGGATGGAGCAATTTTGTGAACCATAAGAAGCTTGTTGCTGGGGATTCCATTGTGTTTTTGAGGGCTGAGAATGGGGATCTTTGCGTTGGCATAAGGAGGGCCAAGAAGGGAATTGGTGGTGGACTTGAGTACTCAGCAGCCCCCCTATTTGGTGGGCATTCTGGTTTTCTCTGTGAGGATGAAAACTCATTCTTGAGGAGGAAATGTCATGAGGAGTTGAAGGGAAGAGTGGCAGCTGAATCTGTTGTTGAAGCTGTAACTTCTGCTGTTAATGGCCGGCCTTTTGAGGCTGTCTACTATCCACGCGCTAGCACGCCGGAGTTCTGTGTTAAGGCCTCTGCGGTGAAGGCTGCAATGCAAATACAGTGGTATTCTGGGATGAGATTCAAAATGCCTTTTGAAACTGAGGACTCATCTAGGATAAGTTGGTTCATGGGAACCATATCTTCTGTTAAGGTTGCAGATCCCATTCATTGGCCTGATTCTCCATGGCGTCTTCTACAGGTAGTGTGGGATGAACCGGATATACTCCAGAATGTTAAGTGTGTAAACCCGTGGTTGGTTGAACTAGTCCCAGATATGCCAACCTTCAATCTCTCTCCACTCTTGCCACCAAGAAAGAAATCACGATTTATACAGCACCCAGATTTTCCCCTCATCAATCAATTTCCTGTGCCACCTTTCTCTGGCAATCTTTTCAATCATACTAACTCCCTATGTAACATTCAAGACAGTAGTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGATTAGCTCCATGTGATTTCCCTTTCAACAAGCTGCAATCAGAAATACTTCGGGGTGGATTTCCGAGGCTTGACCATGCAGTCCAACCTGCTAGACCTCCATCTGGCACCTACAAGAGCAGCCCAAAGAACAATGCTGATATATCATGCTTGTTGACTGTGGGAAATCCCGGCCCAAGCTTGAAGGAACCCCCTGTTGAAGCAAAAACACCTCACATCTTGTTGTTTGGTCAACTCATTCATACCGAGCAGCAGACTTCAAACAGTAGCTCAGCTAGTACAACTGGGAATAGCTTATCAGAAGGGAATTCACAGAAGGTATCAAATGTTTCTGATGGCTCAGGCTCTGCTTCACACCGAAACAGTCCACTAGAGAATTCTTCTGATGGAGGGTCTCCCTGGTACAAAGATCAGCACAACTCCAATCTTGGAACCGAAAATGTTAACCTCTTGTGTTTAGCTTTGTAG 1785 0.4627 MDSMERVSEKCLDSHLWHACAGTMVRMPPINSKVFYFPQGHAEHAHRKVDFGPTRIPPLIPCRVSGIKYMADPDTDEVFVKMRLIPLRENDLGFEDDCFLGNNGVENQEKPESFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTIIAKDVHGQSWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGLEYSAAPLFGGHSGFLCEDENSFLRRKCHEELKGRVAAESVVEAVTSAVNGRPFEAVYYPRASTPEFCVKASAVKAAMQIQWYSGMRFKMPFETEDSSRISWFMGTISSVKVADPIHWPDSPWRLLQVVWDEPDILQNVKCVNPWLVELVPDMPTFNLSPLLPPRKKSRFIQHPDFPLINQFPVPPFSGNLFNHTNSLCNIQDSSPAGIQGARHAQFGLAPCDFPFNKLQSEILRGGFPRLDHAVQPARPPSGTYKSSPKNNADISCLLTVGNPGPSLKEPPVEAKTPHILLFGQLIHTEQQTSNSSSASTTGNSLSEGNSQKVSNVSDGSGSASHRNSPLENSSDGGSPWYKDQHNSNLGTENVNLLCLAL 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0831 594 CDD B3_DNA 113 214 IPR003340 GO:0003677
Glsi12g0831 594 Gene3D - 112 216 IPR015300 -
Glsi12g0831 594 SUPERFAMILY DNA-binding pseudobarrel domain 105 215 IPR015300 -
Glsi12g0831 594 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Glsi12g0831 594 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 551 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi12g0831 594 MobiDBLite consensus disorder prediction 464 483 - -
Glsi12g0831 594 Pfam B3 DNA binding domain 114 215 IPR003340 GO:0003677
Glsi12g0831 594 FunFam Auxin response factor 304 377 - -
Glsi12g0831 594 Gene3D - 304 375 - -
Glsi12g0831 594 FunFam Auxin response factor 112 216 - -
Glsi12g0831 594 MobiDBLite consensus disorder prediction 523 580 - -
Glsi12g0831 594 SMART B3_2 114 216 IPR003340 GO:0003677
Glsi12g0831 594 Pfam Auxin response factor 266 349 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0831 Glsi-ChrGlsi12 25892793 25895117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0831 1 581 B3 DNA Binding Superfamily AT4G30080 57.407 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi12g0831 B3 2.9e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g0831 12 25892793 25895117 Glsi12g0831 12 25892793 25895117 ECH