Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0830 ATGGAGTTGGGTGAGGAGAGAGAACGGTGGGAGGGTGTGGGACCCGTGCTAGCTCGAAGGATTTTGGCTTTTCACCTTCAGGATTTGAATTTTGAGGCAATTTTAACTTATAAAGTTCCTGTTCGAGAATTAACTCAAATTAAAGAAGAAGGAAAATTTCGGACAGAAAAAAGGGAGAAAATGATCGGACCCAATTTCATGGATGAGATAGACTGCGGCAGCTTCTTCGACCACATTGACGACCTCCTCGATTTCCCCGCCGAAGACGTCGACGCCGGCGCCTTGCCGACAACCGCCGCCGTGAACTGCAACTCGTTCCCGAGCATCTGGCCCGGCGAGTCCGAGTCGTTGCCCGGCTCCGACTCGGTTTTCTCCGGTAACAGCGCGTCGGACCTGTCGGCGGAGCTCTCTGTTCCGTATGAGGACATTGTCCAATTGGAATGGCTTTCAAACTTTGTGGAGGACTCCTTCTCTGGTGGGAGCCTCACAATGAAGAAAGTTGAGCCATCTTGCACCACCAATGATAAGGACTTGGCACATAGCCAATTTCAGACATCAAGCCCAGTGTCTGTGCTGGAAAGCAGCAGCTCTTGCTCCGGCGAGAAGACTGTGCCTCGCAGTCCGGAAATGGTTGTCCCCGTGCCATGTGGTGGACGTGCACGCAGCAAGCGCCCACGCCCTGCTACTTTCAAGCCTCGTCCTGCTATGCAGCTCATTTCCCCTGCTTCATCTGTTGGTGAAAACTCGCAGCGCAATTCGGATACGGAGAATTTCGTAGAGTCCCATCCTGTCAACAAGATACCAAAGCAAGCTGCTTCTGGGGAGCAGAAGAAGAAGAAGATCAAACTGTCGTGTCCGTTAGGTCCTGCTGATACAAACCAGAATGTGTCATCATCAGAAGCAGTTAGGAAGTGTATGCATTGTGAGATAACCAAGACACCACAATGGAGGGCAGGGCCAATGGGGCCAAAAACCCTTTGCAATGCATGTGGGGTTCGCTACAAGTCAGGAAGGCTCTTCCCTGAATATAGACCTGCAGCTAGTCCAACTTTTTGCCCATCCTTGCACTCCAATTCCCATAAGAAGGTTATTGAAATGAGAAACAAGGCACCACTCCATTCAGCTGCCTCACCAGAACTCATTCCAAACACTAACAGCAGCCTTCCCCTGGAATACATGTGA 1182 0.5093 MELGEERERWEGVGPVLARRILAFHLQDLNFEAILTYKVPVRELTQIKEEGKFRTEKREKMIGPNFMDEIDCGSFFDHIDDLLDFPAEDVDAGALPTTAAVNCNSFPSIWPGESESLPGSDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFSGGSLTMKKVEPSCTTNDKDLAHSQFQTSSPVSVLESSSSCSGEKTVPRSPEMVVPVPCGGRARSKRPRPATFKPRPAMQLISPASSVGENSQRNSDTENFVESHPVNKIPKQAASGEQKKKKIKLSCPLGPADTNQNVSSSEAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVIEMRNKAPLHSAASPELIPNTNSSLPLEYM 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0830 393 ProSiteProfiles GATA-type zinc finger domain profile. 299 335 IPR000679 GO:0006355|GO:0043565
Glsi12g0830 393 FunFam GATA transcription factor 295 379 - -
Glsi12g0830 393 MobiDBLite consensus disorder prediction 182 278 - -
Glsi12g0830 393 MobiDBLite consensus disorder prediction 182 203 - -
Glsi12g0830 393 Gene3D - 299 349 IPR013088 GO:0006355|GO:0008270
Glsi12g0830 393 SMART GATA_3 299 349 IPR000679 GO:0006355|GO:0043565
Glsi12g0830 393 Pfam GATA zinc finger 305 338 IPR000679 GO:0006355|GO:0043565
Glsi12g0830 393 CDD ZnF_GATA 304 351 IPR000679 GO:0006355|GO:0043565
Glsi12g0830 393 PANTHER GATA TRANSCRIPTION FACTOR 71 374 - -
Glsi12g0830 393 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 303 362 - -
Glsi12g0830 393 ProSitePatterns GATA-type zinc finger domain. 305 330 IPR000679 GO:0006355|GO:0043565
Glsi12g0830 393 MobiDBLite consensus disorder prediction 241 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0830 Glsi-ChrGlsi12 25876899 25879234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0830 79 372 C2C2-Gata Transcription Factor Family AT4G32890 36.364 7.54e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi12g0830 GATA 7e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g0830 12 25876899 25879234 Glsi12g0830 12 25876899 25879234 ECH