Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0823 ATGGAATTTTCCAAGGTTAATGGTCATATTGGCAATGGCTCCTTGGAGCTTTGCAATGGCAGTGTTTCTAACAATGACCCACTGAACTGGGGAATGGCAGCGGAGGCACTGAAGGGAAGCCATTTGGAAGAGGTGAAACGAATGGTGGAGGATTACCGGAAGCCGGTGGTCCTGCTTGGAGGGAAGGGCCTGACCATATCGCAGGTGGCGGCGATCGGGAACCACGACTCTGGCGTGGCGGTGGAGCTGTCGGAGGAGGCTCGCCCCGGCGTCAAGGCCAGCAGCGATTGGGTCATGGAAAGCATGAACAAAGGCACCGACAGTTATGGGGTGACCACCGGGTTTGGTGCGACATCACACAGGAGAACCAAGCAGGGCGGGGCTCTCCAGAGGGAGCTTATTAGATTTTTGAATGCCGGCATCTTTGGCAATGGCACAGAATCATGCCACACTTTACCTCACACAGCCACAAGGGCAGCCATGCTGGTTAGAATCAACACCCTTCTTCAAGGATACTCAGGCATCAGATTTGAAATCTTGGAAGCCATAACCAAGTTTCTCAACCACAACATAACTCCATGCCTACCTCTCCGAGGAACAATCACTGCATCAGGTGACCTGGTTCCCTTGTCCTACGTTGCTGGCTTGTTAATTGGCAGACCCAACTCCAAGTCCATAGGACCTGATGGAAAAGTTCTCTCTGCTAAAGAGGCCTTTGAACTAGCTGGAATTGGTGGTGGTTTCTTTGAATTACAACCTAAAGAGGGTTTGGCACTAGTGAATGGCACTGCAGTGGGATCTGGGTTAGCTTCCACTGTTCTTTTTGAGGCAAATATACTGGCTGTTCTCTCAGAAGTCTTGTCAGCAATTTTTGCTGAGGTTATGCAGGGGAAACCAGAATTCACAGACCACTTGACACATAAATTAAAGCACCACCCTGGCCAGATTGAGGCTGCAGCTATAATGGAACACATTTTAGATGGAAGCTCTTATGTTAAAGCAGCTGAGAAGTTACATGAGATTGATCCTCTTCAGAAGCCTAAACAAGACAGATATGCACTAAGAACATCTCCTCAGTGGCTTGGACCACAGATTGAAGTCATCAGGCAAGCGACAAAGATGATTGAGAGGGAGATAAACTCTGTGAATGATAACCCATTGATTGATGTTTCGAGGAATAAGGCACTTCATGGAGGAAATTTCCAGGGTACCCCAATTGGTGTTTCAATGGACAACACCAGGTTGGCCATTGCTTCAATTGGGAAACTCATGTTTGCCCAATTCTCTGAGCTTGTCAACGACTTCTACAACAACGGATTGCCTTCAAATCTGACTGCGAGCAGGAACCCAAGCTTGGATTACGGCTTCAAAGGAGCTGAAATAGCAATGGCGTCCTACTGCTCAGAACTTCAATTCCTTGCCAATCCAGTCACCAACCATGTCCAGAGTGCAGAGCAACACAACCAAGACGTGAACTCTTTAGGCCTGATTTCCTCAAGAAAGACAGCAGAAGCTGTGGAAATATTGAAGCTCATGTCCTCCACTTTCTTAGTTGGACTGTGCCAAGCCATTGATCTGAGGCATTTGGAGGAAAACTTAAAGAGCACTGTCAAGAACACCGTGAGTCAAGTGGCCAAGAGGGTCCTCACAATGGGTGCCAACGGCGAATTGCACCCATCCAGGTTCTGTGAAAAGGACTTGCTAAAAGTGGTGGAACGCGAGTATGTGTTTGCTTACGTTGATGATCCCTGCAGTGCAACCTACCCATTAATGCAGAAACTGAGACAGGTCCTGGTTGATCATGCACTGGAAAATGGTGAAGCAGAGAAGAATCTAAGCTCCTCCATTTTCCTAAAGATTGCAGCTTTTGAGGAAGAGCTCAAGACCCTTTTGCCCAAAGAAGTAGAAAGTGCCAGAATTGAAGTTGAGAATGGAAACCCTGCAATTCCAAACAGAATCAAGGAATGCAGGTCTTACCCACTGTACAAATTTGTGAGAGAAGAACTGGGCACAGATTTGCTGACAGGTGAGAAAGTTAGGTCACCTGGTGAAGAATTTGACAAGGTTTTCTCCGCAATCTGTGAAGGAAAGTTGATTGATCCTTTATTGGATTGCCTGAAGGAGTGGAATGGTGCTCCTCTGCCAATATGTTAG 2154 0.4735 MEFSKVNGHIGNGSLELCNGSVSNNDPLNWGMAAEALKGSHLEEVKRMVEDYRKPVVLLGGKGLTISQVAAIGNHDSGVAVELSEEARPGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQRELIRFLNAGIFGNGTESCHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPDGKVLSAKEAFELAGIGGGFFELQPKEGLALVNGTAVGSGLASTVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAEKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRQATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSSTFLVGLCQAIDLRHLEENLKSTVKNTVSQVAKRVLTMGANGELHPSRFCEKDLLKVVEREYVFAYVDDPCSATYPLMQKLRQVLVDHALENGEAEKNLSSSIFLKIAAFEEELKTLLPKEVESARIEVENGNPAIPNRIKECRSYPLYKFVREELGTDLLTGEKVRSPGEEFDKVFSAICEGKLIDPLLDCLKEWNGAPLPIC 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0823 717 PANTHER HISTIDINE AMMONIA-LYASE 24 717 IPR001106 -
Glsi12g0823 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841
Glsi12g0823 717 Gene3D - 17 263 IPR024083 -
Glsi12g0823 717 Pfam Aromatic amino acid lyase 64 539 IPR001106 -
Glsi12g0823 717 Gene3D - 530 651 IPR023144 -
Glsi12g0823 717 FunFam Phenylalanine ammonia-lyase 17 263 - -
Glsi12g0823 717 FunFam Phenylalanine ammonia-lyase 530 651 - -
Glsi12g0823 717 SUPERFAMILY L-aspartase-like 26 717 IPR008948 GO:0003824
Glsi12g0823 717 NCBIfam phenylalanine ammonia-lyase 26 707 IPR005922 GO:0005737|GO:0006559|GO:0016841
Glsi12g0823 717 CDD PAL-HAL 62 527 IPR001106 -
Glsi12g0823 717 FunFam Phenylalanine ammonia-lyase 264 568 - -
Glsi12g0823 717 Gene3D Fumarase/aspartase (Central domain) 264 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0823 Glsi-ChrGlsi12 25779106 25782568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0823 26 717 Monolignol Biosynthesis Gene Families AT3G53260 84.971 0.0 1242