Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0820 ATGGGTAATGTTGAAATTCCCAATTGGCTTAAAGGGTTGCCATTGGCACCGGAATTTCACCCAACTGATACCGAGTTCGCCGACCCAATTGCTTATATTTCAAAGATTGAGAAGGAAGCTAGCGCCTTTGGAATATGTAAGATTATTCCACCATTGCCGAAACCTTCAAAAAGATATGTCTTCTCTAATTTGAATAAGTCCCTTGTAAAGTGCCCGGAAGTGGTTTCAGATATCAATTCAGTTGGAGTTAGTAATCCTTTGAAAATGGGTTCTGGAGATAGTGGTAATGATGAGGAGGGGCGGGCTGTGTTTACCACAAGGCATCAAGAACTGGGGCAGGGTATGAAAAGAACCAAAGGAACAGTTCAAACTCCATTGTCAGGTGTTCATAAACAAGTATGGCAAAGTGGGGAGATTTATACACTGGAACAGTTCGAGTCTAAATCCAAGGCTTTTGCAAGAAGCATACTAGGTATGGTTAAGGAGGTTTCTCCACTGGTCATAGAGGCTATGTTTTGGAAGGCAGCTTCAGAGAAACCTATATATGTAGAGTATGCCAATGATGTGCCTGGGTCTGCTTTTGGAGAATCCAAGGGTCAATTTCATTATATTCATAGAAGGAGAAGGAAAAAGGCTTATTATTATAAGAGAAGTCTAGATAACTCTGATTGCTCACAAACTGAAATGCATAGTTTAAGAGATATCCAGATTAATGAAACTAAGGATGCTTCTGCCCAAATTCTTACTGACACATGTTTACAGACATTGAATTCAACTACAAACTTGTCAACGTTTTCATCCAATGAAGCATCCCTTTCTACCAGGCAGAAGAGTTCAGATGCCTGCAATGAGATGGAAGGTACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTACAAGTTATTGCACGCTCCCCTGGCTCACTAACGCGTTTCATGCCGGATGATATTCCTGGTGTTACTTCCCCCATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCACAGCATGAATTTCCTTCACACTGGCTCACCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAAGTTGTCCGCTCTGAGGCTTATGGTGGTGATATTGATCACCTAGCTGCTCTCACACTCTTGGGGGAGAAGACAACCCTGCTATCACCTGAGGTAGTTGTTGCATCTAGGATCCCTTGTTGCAGGTTGACACAGAACCCTGGCGAATTTGTTGTGACTTTTCCAAGGGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAGAGTAGCCAAGGAAGCTGCAATGCGTAGAGCAGCAATGAATTATCTTCCCATGCTCTCCCATCAGCAACTGCTTTACTTGTTGACTATGTCTTTTGTTTCAAGAGTGCCAAGAACATTACTTCCAGGTGTGCGGAGTTCCCGTCTCAGAGACCGTCAGAAAGAAGAGAGAGAGTTGTTGGTAAAAAGAGCTTTTATAGAAGATATGCTGCAGGAAAACAATCTTCTATCCATTCTTCTTGGAAAGCAATCGACTTATCATGGTGTTTTATGGAATGCTGATTTACTACCAGATTCAAATAAGGATTCTCATTTGCCTGATTTAACTTCTACTACTGGAACCTCAATGGCGGAGGACATGTCAAATTTGACTTCTGCAGATAAGAGTAGTCCCAGTTATCTCTTTGACGAGATGAGCTTGTATATGGGGAATCTGACTGATTTTTATCTAGGCGTTGATGGTCTTCCATGTCACTTCCGAACTGATTCAGGGGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGACTGTGGTACAACCATCCAAGAAATCATTAATGAACCTCTTGCCTGTTTATCATCATCTATTTCAAGATTCCTCTCTGGACAATATTGATTTCATGCCAGGCTCTGTCTCAGGGAATCTCCTTTCTGTTTCTGATATTTCTTCAGCAAAGGAACCACCAAAACTATCATTAATGAACTTTGACAAGGGTTGGAACACCTCTAGTAAATTTTTGAGGCCACGTACTTTCTGCCTGGAGCATGCTATTCAAGTAGTGGAGATGTTGCAATGTAAAGGTGGAGTGAATGTGCTTGTAATTTGCCATTCAGACTACCAGAAAATAAAGGCACATGCCAGGGCAGTAGCAGAGGAGATAGATAGTGCTTTTGATTATAATGAGGTTCCATTAGATATTGCATCCTCTGAAGATTTGACCTTGATAGATCTTGCAATTGATGGTGAAGAACATAATGAATGCGAAGAAGACTGGACATCTAAGCTAGGCATTAACCTGCGGTATTGTGTCAATGCAAGAAAAAACTTTCCTTCTAAACAAATTCCTTACAGGCTGGCATTGGGGATGCTGTTCTCTAATAAAGGTCCTGGTTCAGAATTCTTTTCTATAAATTGGCAGTCAAGGAGATCTCGCTCCAAAAGGTTAAATTATTTAGCCCAGGTTAAAGCATGTGATGACGTTCAAAGAAAGAAGGAAGATCAGTTGGAAGGAAAAGTGGATGTCTCCATTGCTAAAAAGATGATTCAATATTCAAGGAGAAAGTTCAAGACAAAGCAAGGTTGTTTCTCTGGAGCAAATATGGTCCATGAACCCCATGACCATGAGCTTGACACTGAGAGTTCTAGGAGTGATTGTGCAGCATCACGTGTCTCTACTTCTACTGGATTGTCTCAAATGCAACCTGAAATCCAGGTTACTGAGGTGGCCACTAGTATGAGCTTGAACGCTGCTTCTTCACAACTTAAAAATTTCTCTCTGGAACCTACGTTAATGGATGGAAACGTTGGATCTGATGCCCAGAATCAAACTAGGAAGGAATTAGAGATAGATGGCGAAAGTAGTTTAACAACTGATCATTCTGAGATGCAATACAAGATCTGTTCCTCAGAAACGCGTAGCAAGGACAATCAGATTTCTCATGACAAGAAATATTCTAGGTCACCTGTTATTGCAACAAGCAAAAAGCTAGAAATGCTTACAAAGAATCAAACTGCAGAAGCAGTTAACATCAGTAAAAAGTGCAATAGCTTGGATTTGGATGAAGAACATCAAAAACTACAGTCTACCCACAAAAGTAACAAGGGTGAAGCTGCATCATCTTCTGTTTCATTGGTAACTCAGCCTACGCTTACCTCCATGGAAGAAATTTTTGAATGTGCAAGAGAGAATGATGGCACAGAATACATTAGCAATGGCATGTCTAGTTTGAATGCAAGTGACAAGGAACCTATTCTAAATTATAATAAACTGATAAATGAGAACACTCCAAACAGAGAAACTTTTGAAGTTCCAAGAGAGCTTTGTGCCCCCATAGAGTTGCATAATGATGCAGCCTTGGATGTTGAAGTGCAGCAAGAAACTCAGATTTCTCAAGCTAACAACCAGGAAATAAATCAGTCTATCCAACCTTCAGTGAAACAATGGTGTGAATTTCCAAAAGGGAAATATGCTGAAGTGGTCAATAATGAAGTGATTTTGGACTCTGAAAAACAGGATCTGATCCAGAATAAGAATAAAGTTAACGAGAAACCTGCCCCTAGGTATGTTGCAAAAGGGGAACATGAAAGTGTAACGTTCTCATGTTCTGAGATTTCAGTGGAAACCTGTCCTAAAGGAAACTCCGACACTCAATCTACTTTAGATGTAAAAAAGGAACCGGCAATCCAGCCAAAAAAGGCAGATGATAAGGAAATCTGCTCTGGTACGGGTATTGAGAAATCGTTAAAGGACTCTTCTCTGTCAATCCAGGAGTGTTCTACAATCGAGAGAGAGACATGTGCTAGAGATGACTTTGATGGAAGCCAAGTTCATTTTTCACAAGACAATAGGGTGTTGGAAAGCTCTGATGAGTTAACTACACCTGGCCCCTTATCATATGCCCGGAAGAAAAGAAACAGGGAATTGGAGCAAATAACAAAGAACAGTTGTTGCTCTGGCTTTGTTAGAAGTCCATGTGAAGGGTTGAGGCCAAGGTCTGGGAAGGTAACCCCAGGTAGAAGCAGGATTGCAACCAGCAATTCAGTCGAAGAAAATGTGGAGGCTAAAAGGCCTAGGAGACCTTCAGTTGTTCTGGTTCCTAGCAAGAAAAAGGATGTTGTTAAGAGGTCTCACAGGTGCGACCTTGATGGTTGTCATATGAGTTTTGTGACTAAGGAAGAGTTAATGTTGCACAAACGCAACCGTTGCCCTCATGAAGGGTGTGGAAAGAAGTTCAGATCCCACAAATATGCTCTGCTTCACCAGCGTGTTCATGATGATAAGAGGCCCCTCAAGTGTCCATGGAAAGGTTGCTCCATGTCATTCAAGTGGGCATGGGCAAGGACCGAGCATATACGAGTGCATACTGGGGAAAAGCCGTATCAGTGCAAGGTTGAGGGATGTGGCCTTTCTTTTAGATTTGTATCTGATTTTAGCAGGCACAGACGGAAAACAGGGCACTATGTGAAGTCACTTGACTGA 4560 0.4171 MGNVEIPNWLKGLPLAPEFHPTDTEFADPIAYISKIEKEASAFGICKIIPPLPKPSKRYVFSNLNKSLVKCPEVVSDINSVGVSNPLKMGSGDSGNDEEGRAVFTTRHQELGQGMKRTKGTVQTPLSGVHKQVWQSGEIYTLEQFESKSKAFARSILGMVKEVSPLVIEAMFWKAASEKPIYVEYANDVPGSAFGESKGQFHYIHRRRRKKAYYYKRSLDNSDCSQTEMHSLRDIQINETKDASAQILTDTCLQTLNSTTNLSTFSSNEASLSTRQKSSDACNEMEGTAGWKLSNSPWNLQVIARSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSPKTWYAVPGDYAFAFEEVVRSEAYGGDIDHLAALTLLGEKTTLLSPEVVVASRIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAMRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRTLLPGVRSSRLRDRQKEERELLVKRAFIEDMLQENNLLSILLGKQSTYHGVLWNADLLPDSNKDSHLPDLTSTTGTSMAEDMSNLTSADKSSPSYLFDEMSLYMGNLTDFYLGVDGLPCHFRTDSGALACVGCGILGFPFMTVVQPSKKSLMNLLPVYHHLFQDSSLDNIDFMPGSVSGNLLSVSDISSAKEPPKLSLMNFDKGWNTSSKFLRPRTFCLEHAIQVVEMLQCKGGVNVLVICHSDYQKIKAHARAVAEEIDSAFDYNEVPLDIASSEDLTLIDLAIDGEEHNECEEDWTSKLGINLRYCVNARKNFPSKQIPYRLALGMLFSNKGPGSEFFSINWQSRRSRSKRLNYLAQVKACDDVQRKKEDQLEGKVDVSIAKKMIQYSRRKFKTKQGCFSGANMVHEPHDHELDTESSRSDCAASRVSTSTGLSQMQPEIQVTEVATSMSLNAASSQLKNFSLEPTLMDGNVGSDAQNQTRKELEIDGESSLTTDHSEMQYKICSSETRSKDNQISHDKKYSRSPVIATSKKLEMLTKNQTAEAVNISKKCNSLDLDEEHQKLQSTHKSNKGEAASSSVSLVTQPTLTSMEEIFECARENDGTEYISNGMSSLNASDKEPILNYNKLINENTPNRETFEVPRELCAPIELHNDAALDVEVQQETQISQANNQEINQSIQPSVKQWCEFPKGKYAEVVNNEVILDSEKQDLIQNKNKVNEKPAPRYVAKGEHESVTFSCSEISVETCPKGNSDTQSTLDVKKEPAIQPKKADDKEICSGTGIEKSLKDSSLSIQECSTIERETCARDDFDGSQVHFSQDNRVLESSDELTTPGPLSYARKKRNRELEQITKNSCCSGFVRSPCEGLRPRSGKVTPGRSRIATSNSVEENVEAKRPRRPSVVLVPSKKKDVVKRSHRCDLDGCHMSFVTKEELMLHKRNRCPHEGCGKKFRSHKYALLHQRVHDDKRPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYQCKVEGCGLSFRFVSDFSRHRRKTGHYVKSLD 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0820 1519 SMART c2h2final6 1404 1426 IPR013087 -
Glsi12g0820 1519 SMART c2h2final6 1427 1451 IPR013087 -
Glsi12g0820 1519 SMART c2h2final6 1457 1481 IPR013087 -
Glsi12g0820 1519 SMART c2h2final6 1487 1513 IPR013087 -
Glsi12g0820 1519 FunFam Probable lysine-specific demethylase ELF6 1454 1483 - -
Glsi12g0820 1519 SUPERFAMILY Clavaminate synthase-like 289 457 - -
Glsi12g0820 1519 Gene3D Cupin 9 465 - -
Glsi12g0820 1519 MobiDBLite consensus disorder prediction 1355 1382 - -
Glsi12g0820 1519 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Glsi12g0820 1519 MobiDBLite consensus disorder prediction 1058 1072 - -
Glsi12g0820 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 1459 1481 IPR013087 -
Glsi12g0820 1519 Pfam JmjC domain, hydroxylase 325 444 IPR003347 -
Glsi12g0820 1519 MobiDBLite consensus disorder prediction 900 924 - -
Glsi12g0820 1519 ProSiteProfiles JmjC domain profile. 295 461 IPR003347 -
Glsi12g0820 1519 SMART cupin_9 292 461 IPR003347 -
Glsi12g0820 1519 SUPERFAMILY beta-beta-alpha zinc fingers 1428 1460 IPR036236 -
Glsi12g0820 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 1487 1513 IPR013087 -
Glsi12g0820 1519 MobiDBLite consensus disorder prediction 910 924 - -
Glsi12g0820 1519 Pfam jmjN domain 17 50 IPR003349 -
Glsi12g0820 1519 SUPERFAMILY beta-beta-alpha zinc fingers 1467 1510 IPR036236 -
Glsi12g0820 1519 SMART JmjN_1 15 55 IPR003349 -
Glsi12g0820 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 1429 1451 IPR013087 -
Glsi12g0820 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 1457 1486 IPR013087 -
Glsi12g0820 1519 Gene3D Classic Zinc Finger 1425 1511 - -
Glsi12g0820 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 1427 1456 IPR013087 -
Glsi12g0820 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 1489 1513 IPR013087 -
Glsi12g0820 1519 MobiDBLite consensus disorder prediction 1049 1072 - -
Glsi12g0820 1519 MobiDBLite consensus disorder prediction 1237 1263 - -
Glsi12g0820 1519 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0820 Glsi-ChrGlsi12 25749279 25759023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0820 1 881 C2H2 Transcription Factor Family AT5G04240 57.350 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi12g0820 JmjC 5.1e-36 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g0820 12 25749279 25759023 Glsi12g0820 12 25749279 25759023 ECH