Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0813 ATGAAGCCTACAATTTTGCTGCCAAAAGCCCATGCACCTCCATTCTCTCCCCGAATCTCCCACGTACCCACCTTGGGAAGAGAGAGAGAGAAAGGAGAGGGAAACGAAACGCGGCTGGTTGATTTTCAGCTTCCTTTCCCTATACGTTTGGAGATGTCTGGGAGGAGTATTTTAGATATGAAGACTGAGGGTTTACAACCCCTGCCAAATAGGAATATTGGAGAAACTTTGCAGAGTGAACTTGAAAGGATGCTGCAAGAGCAGCGCAATCAACAGTTAATCAATCGAGAAAGGGATCTCAATATTTATAGGAGTGGAAGTGCTCCTCCGACAGTGGAGGGATCGCTAAGTGCTGTTGGTGGTCTTTTAAGGAACGCTGATTTTGGAGGAGTCAATAGGAGCAGTAATAATAATGGACTTTTGACTGAAGATGAGATTCGTTCACACCCTTCTTATCTTCAATATTATTACTCACATGACAATATAAATCCAAGGCTGCCCCCACCATTGTTGTCAAAAGAAGATTGGCGTGTTGCTCAAAGGTTTCAGGCTGGTGGGTCTTCTTTTGAGGGATTTGGGGACTGGAGGAAGAAGTTGGCCACGAATGGGGATAGTTCATCATTATTTTCAATGCAGCCAGGACTTTCTGTGCAACAAGCAGAGCATGATCTGATGGAACTGAGGAAAGCCAGTGGACAGAGTCTATCAAAGCTGAATTCACCACAGTGGCTCAACAGTTCTACAGATGGTTTGGTCAGAATGTCAGGTGGGGGCCTTGGTATGAGGAGGAAGAGTTTTGCTGACATTCTTCAGGAAGGACTTGATCAACCTGCTTCCCTATCTGGCAACGTGTCACACCCAGCAAGTCACAATACATTTGCTGATATTATTGATTCAACTGGTATGGCTGATCATCATCCAGTAGGTTTATGTAATGGAGTGGAATCCTTGGAGGGCTTGCGTTCTGCAGCTTCTACTCCTGGTCTGATTGGACTTCAGAACCCTGGTGTAATGGTTTCTCATGGTTTTGCATCTGCTGTTGGTTCATCTCTGTCAAGGGGTACAACCCCTGAACCACAGATCATTGGTAGATCTCTTGGGTCAGCACTTCCTCCTCTTGGTAGTAAAGTTAACTATGTTGAGAAAAATGTTGCAGGCTTGAGTTCCCAGAATGGTCACTCTTCCAGTATGACTGAACTTACTGAAATGGTGTCTTCTTTATCTGGGATAAGTTTGTCTAATACTAGACATGCAGAGCAAGATAGTCTTTTGAAATCTAAGCTACCATTGGAAGTTGATAATCGGCCTGATTTTTTTTTAGGCACATTAAGTAATGATAACAACTTCATTGAATTGTCCAGACACAATGAGATTTTAATGAACCTTAACACAATGAGTTCAAATGAGCAAGCCAATTTACTGAAAAAAAGTGCTTCTTCTGCTAGTCTTCGCTCAAAAGTGCATTCTACTGGAAATCTCCATCAAAATCATTCAAGTTTTCCAAGTATCGATATTGCTGGCCATGTTCCTGGTGCATATCTTGTAAACTCAAAATTGAATGCTGCGTACAAGAATCATCTTGACACAGCTTTGAGAGGTAGAGAAGGACAAAGTTTAGATACACTGGGAAATCAAGTTATTCCTGACTTTCATTCCACAGCTGTGGACCCATGCTTCATCCAATGCTTGCAGCAAAGTTCTGATTACTTGATGCATGGTCCAGGTGATCCATCTCAAGCTAGAAATTTCTCTGGTACTTCACATGGAGACTTGGAGGGACTTCAGAATGCATATATTGAGTCACTTCTTGCTCAACAAAAACAACAGTATGAGCTTCCTCTTCTGGCAAAATCTGGCCTTTATAACTATGGGTTCTATGGGAGTCAGCAATGTGGTCTTGGCATGCCATACTCAGGAAGGCAGATTGCAAATTCCTCACTTCCTTCTCTTCGATCTGGAAATCCACTGTTTGAGAATGAAAGTGTATCACACTTTGATTCTATGACAAAGAGTTCGGTGGGAGGTTCTATTGGGCCATGGCATGCTGATATTGGCAATAACTTGGAGGGTAGATTTGTATCATCCTTACTAGATGAGTTCAAGAACAACAAGGCTAGATCTTTTGAACTTTCAGATATTGTTGATCATGTGGTTCAATTCAGTACTGATCAGTATGGGAGTCGCTTTATTCAGCAGAAATTAGAAACGGCCTCAGTAGAAGAAAAGACCAAGATATTTCCTGAGATCATACCTCATGCTCGTACCTTGATGACTGATGTCTTTGGCAATTATGTTATACAGAAATTTTTTGAGCATGGTACAGAAAGCCAAAGAAAGGAATTAGCCTGCCAACTTACTGGTCATGTTTTACCTCTCAGTCTGCAAATGTATGGTTGCAGAGTGATTCAGAAGGCATTGGAGGTGGTTGACGTTGATCAGCAGACTCAAATGGTTTCAGAGCTTGATGGTGCAATAATGAAATGTGTACGTGATCAAAATGGTAACCATGTTATTCAGAAGTGTATAGAGTGTGTTCCTCAAGATCGAATTCAGTTTATTGTCTCATCTTTCTATGGGCAAGTTGTGGCACTTTCTACCCATCCATATGGATGCCGAGTTATTCAGAGGGTTCTGGAACATTGTAATGATCTAAATACGCAAAATATTATCATGGATGAAATTATGCAATGTGTCTGCACTTTAGCGCAAGATCAATATGGAAATTATGTTATTCAGCACGTCCTGGAATGTGGTAAACCGCATGAACGATCTGCTATTATCACCAAGCTTGCTGGACAAATTGTGAAGATGAGCCAGCAGAAATTTGCTTCTAATGTTATTGAGAAGTGCTTGGCTTTTGGCAGTCCTGATGAGCGTCAGATTTTGGTGAATGAAATGCTTGGTAACTCTGATGAGAATGAACCCTTACAGGCTATGATGAAGGATCCTTTTGGAAATTATGTTGTGCAAAAGGTTCTTGAGACTTGTGATGATCAAAGTCTTGAGTTGATTCTTTCTCGTATCAAGGTTCATTTAAATTCCCTGAAGCGATACACTTATGGTAAACATATTGTTTCTCGTGTTGAGAAGCTCATAACCACTGGAGAAAGGCGTATCGCTAACTTGGATGTTAATGTTGATCAAACGCGGACTTCCGTGTATGACTTTGTCCTCCGTTTTGATATGGACAAGAAAGCTGAACATGTCTGCAAGCCGCCAATGTATGAACATATCTGGAGTCGTGAATACTGGGTCTTTACCCGCTTTCAGTTTCTCTTCTGCTTCAAGATGATCAAAAGTGGTCTCAGGGCCTCTTCTAGCTTCTGCTGCAGAATGCTGTGGTTGGTCCTTGTGGTTTTGGGGTCATTGACATTTGTACAGTGCCAACAAAATGGTGACTTCAACCAATTCAATGATTCTGCTGCTCTTCCCTTTATGACGCAGCTTGTGTATGGCCAGCTCTCCAATCTTACTGGGATTCTCAGTCACGAAATCAAAAGCCAGGCCAGCTTCTGCGTTGAAGACCCGGAAGCTGAGTGGAACCAAGCATTTAACTTTTCATCTGATTTGGATTTCTTGGCTTCTTGCATTCAGAAGACTAAAGGAGATATTACGCGACGTTTGTGTACAGCAGCAGAAGTGAAGTCTTACTTTAGAAGTATCACTGAAAAATATGAAAGTACCAATTACTTGAAGCCTAACAGGAACTGCAATTTAACCTCCTGGGTTACTGGTTGTGAGCTGGATGGGCCTGTAGTATTGGCTCAGATCAGCAGGTTGACCTTAGCAATTCACAGGACATCCCTGCAAGAACTACAAACTGCCAGGCATGTTGTGAGGGCTTCTTCTGTCCGCATGCTTGTCCATTGGGTTCCTATTGCCCTCTTGCAACACTCAATGAATCAACTGGTGTATGTGAACCGCTGCTACAATTTGGCATCATGTAAATCGAACACTGAACATCAGAACCTTCATGTATATGGAATCATGTTCATAGTTGCTTTGAGTACTTTGCTACTCATTATTTACAGCTTCTCTGACCAAGTTCTTACAATTAAGGAAAGGAGGCTGGCTAAATCAAGAGATGCAGCCGCTGTAAATGCAAGGAGTACAGCAAAAGCACGCAAAAGGTGGAAAGATGCAAAAGATGCAATTGGGAAGCATGGTAGAAGGCTTCAATCTCATTTGTCTTTCACATTTTCTCGCCAAAAGAATGTAGCACACCCAGAAGAACTTCAGATTTTAAGTCAAGTTATACCCGAGACAGATGATGATTTATTATCGCCTCCACCGTCAAGCACTTCAAAAGCAACAGTTCCTCCTTTTGCATTGTCAAAGCAGAAGGATTCAGAACTCTCTGACCGAATGGAAATGAGGCATGAAATTGAAAATGAACCTTTTACTCATGGTGCATTTGATGTGGTAACTGGACAGAAGATCATTTCTGGGAATAACTCGAAGGGGAAAAAACTACATACCCGTAGTAAGATATTTAGGTCTGCATATTCCCAACTTGAGAAGGAGAAGACTCAGCAACAAGAATACAAGAATCTTACCTTCTCAGGAGTAATTAATATGGCTACCCACAGTGAACAAAGAAAGAGGACTCTAATTGAGATTTCTTTCAAAGATCTCAGTCTTACTTTAAAATCAGAAAAGAAGTATCTATTGCGATGTGTTACTGGGAAAATAAAACCTGGCCGCATTACTGCTGTCATGGGACCATCAGGGGCTGGTAAAACAACATTTCTTTCAGCACTTGCAGGAAAGGCATTTGGATGCAGAATGAGTGGTTCAATTCTTATAAATGGAAAGAATGAATCAATCCACTCTTACAAGAAAATTATTGGTTTTGTGCCACAAGATGATATTGTTCATGGAAACCTGACAGTGGAAGAGAATCTCTGGTTCAATGCAAATTGCAGGACCAGAGAGGCTAGTGTTATATTTCTTATGAGGAAGTCTCCAGATTATATCCTTCTTAAAGGAGTTATAGCATTTTGCTCTAACCAGATACACTTCATGCCTTCAAAAAGGGGACAACTCCACTACACCTTGTCCCAAAACCTGTTAATTGGTGAAAGTAGGGCAGATAAGGCTTGTGGGTGGTATCATGGCATCTACTTAACACAGTCAAGCATAGAAGGTTTTCAAGCTTATGTCCAGCATGGGGAGAGGCTGTCTGCTGAATTGTCAAAACTGGATAAAGTTGTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAACCTGTGCGGAATTCCCTGGTTGGAACAGTAGAAAAGCGAGGGATATCTGGAGGCCAAAGAAAGAGAGTGAATGTTGGATTGGAAATGGTGATGGAACCCTCACTACTGATCCTTGATGAACCGACATCAGGTTTGGATAGTGCATCATCTCAGTTACTTCTTAGAGCACTTCAACGTGAAGCTCTTCAAGGGGTGAATATCTGCATGGTAGTTCACCAACCCAGCCATGCCTTGTTCAAGATGTTTGATGATCTGGTTCTCCTTGCAAAAGGTGGTCTTACTGTCTATCATGGACCTGTCAGTAAAGTTGAAGAATACTTTGCCAGCCTTGGGATCATAATCCCCAATAGCATTAATCCTCCAGACTACTTTATTGACATTTTGGAGGGCATCATAATACCTGCTGGAATCTCAGCAGTAAATTATGAGGAGCTCGCGGTTAGATGGATGTTTTACAATGGTTACTCAGTACCTCCTGATATGCAACAGAATGTAGCTGCACTTGCATCTTCCAGGCTTTTAAACCCAGTTAATGAAACAAACTATGATTATGCTGTCAATGAAGAACAATCCTTCACTGGAGAGTTATGGAAAGATGTGAAGGGTAATATAGAGATGCAGCAAGAGAAGTTAAGACTGGATTTTTTGAAGTCTAGGGATTTATCAAATCGGATAACTCTTGGTGTGTTCCGGCAATATAAGTACTTCCTTGCAAGAGTTGCTAAGCAGCGACTACGGGAAGCCAGAGCACAAGCCATAGACTATCTGATTTTATTACTTGCTGGAGCCTGCCTAGGATCACTTATAAAAGTGAGTGATGAAACACTTGGTGCAGCAGGATACACATACACTGTGATTGCTGTTTCTCTTCTATGCAAAATAGCAGCTTTGAGATCATTTTCTCTGGATAAATTACAATATTGGAGGGAGAGTGCTTCTGGCATGAGCAGCTTGGCTTATTTTCTTTCTAAGGACACAGTTGACCATTTTAATACTGTTATCAAGCCTGTGGTGTACCTGTCTATGTTCTATTTCTTCACCAATCCAAGATCTAGTTTTGTGGATAATTACATTGTGCTGCTCTGCCTTGTATACTGTGTGACTGGCATAGGCTATGCATTGGCCATCATCTTTGAACCCGGAGCTGCCCAATTGTGGTCAGTACTGCTTCCAGTTGTTTTGACTCTGATCGCCACACAGCCAAAAGATAGTGATTTTATGAAGCGTATAGCCGATTTGTGCTATACCAAATGGGCTCTACAAGCATTCGTAATTGCTAATGCTGAAAGGTATGATAAAGTGTGGCTCATAACTCGTTGTGGTGCTCTTAAGAAAAGCGACTATAATCTTAATGATTGGCGTTTGTGCATATCCATCCTTATCCTCTTTGGTGTAGTTAGTCGTTCAATAGCATTCATCTGTATGGTGATCTTTCGAAGGAAGTAA 6696 0.4156 MKPTILLPKAHAPPFSPRISHVPTLGREREKGEGNETRLVDFQLPFPIRLEMSGRSILDMKTEGLQPLPNRNIGETLQSELERMLQEQRNQQLINRERDLNIYRSGSAPPTVEGSLSAVGGLLRNADFGGVNRSSNNNGLLTEDEIRSHPSYLQYYYSHDNINPRLPPPLLSKEDWRVAQRFQAGGSSFEGFGDWRKKLATNGDSSSLFSMQPGLSVQQAEHDLMELRKASGQSLSKLNSPQWLNSSTDGLVRMSGGGLGMRRKSFADILQEGLDQPASLSGNVSHPASHNTFADIIDSTGMADHHPVGLCNGVESLEGLRSAASTPGLIGLQNPGVMVSHGFASAVGSSLSRGTTPEPQIIGRSLGSALPPLGSKVNYVEKNVAGLSSQNGHSSSMTELTEMVSSLSGISLSNTRHAEQDSLLKSKLPLEVDNRPDFFLGTLSNDNNFIELSRHNEILMNLNTMSSNEQANLLKKSASSASLRSKVHSTGNLHQNHSSFPSIDIAGHVPGAYLVNSKLNAAYKNHLDTALRGREGQSLDTLGNQVIPDFHSTAVDPCFIQCLQQSSDYLMHGPGDPSQARNFSGTSHGDLEGLQNAYIESLLAQQKQQYELPLLAKSGLYNYGFYGSQQCGLGMPYSGRQIANSSLPSLRSGNPLFENESVSHFDSMTKSSVGGSIGPWHADIGNNLEGRFVSSLLDEFKNNKARSFELSDIVDHVVQFSTDQYGSRFIQQKLETASVEEKTKIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRKELACQLTGHVLPLSLQMYGCRVIQKALEVVDVDQQTQMVSELDGAIMKCVRDQNGNHVIQKCIECVPQDRIQFIVSSFYGQVVALSTHPYGCRVIQRVLEHCNDLNTQNIIMDEIMQCVCTLAQDQYGNYVIQHVLECGKPHERSAIITKLAGQIVKMSQQKFASNVIEKCLAFGSPDERQILVNEMLGNSDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNSLKRYTYGKHIVSRVEKLITTGERRIANLDVNVDQTRTSVYDFVLRFDMDKKAEHVCKPPMYEHIWSREYWVFTRFQFLFCFKMIKSGLRASSSFCCRMLWLVLVVLGSLTFVQCQQNGDFNQFNDSAALPFMTQLVYGQLSNLTGILSHEIKSQASFCVEDPEAEWNQAFNFSSDLDFLASCIQKTKGDITRRLCTAAEVKSYFRSITEKYESTNYLKPNRNCNLTSWVTGCELDGPVVLAQISRLTLAIHRTSLQELQTARHVVRASSVRMLVHWVPIALLQHSMNQLVYVNRCYNLASCKSNTEHQNLHVYGIMFIVALSTLLLIIYSFSDQVLTIKERRLAKSRDAAAVNARSTAKARKRWKDAKDAIGKHGRRLQSHLSFTFSRQKNVAHPEELQILSQVIPETDDDLLSPPPSSTSKATVPPFALSKQKDSELSDRMEMRHEIENEPFTHGAFDVVTGQKIISGNNSKGKKLHTRSKIFRSAYSQLEKEKTQQQEYKNLTFSGVINMATHSEQRKRTLIEISFKDLSLTLKSEKKYLLRCVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAFGCRMSGSILINGKNESIHSYKKIIGFVPQDDIVHGNLTVEENLWFNANCRTREASVIFLMRKSPDYILLKGVIAFCSNQIHFMPSKRGQLHYTLSQNLLIGESRADKACGWYHGIYLTQSSIEGFQAYVQHGERLSAELSKLDKVVVVERVIEFLGLQPVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALQREALQGVNICMVVHQPSHALFKMFDDLVLLAKGGLTVYHGPVSKVEEYFASLGIIIPNSINPPDYFIDILEGIIIPAGISAVNYEELAVRWMFYNGYSVPPDMQQNVAALASSRLLNPVNETNYDYAVNEEQSFTGELWKDVKGNIEMQQEKLRLDFLKSRDLSNRITLGVFRQYKYFLARVAKQRLREARAQAIDYLILLLAGACLGSLIKVSDETLGAAGYTYTVIAVSLLCKIAALRSFSLDKLQYWRESASGMSSLAYFLSKDTVDHFNTVIKPVVYLSMFYFFTNPRSSFVDNYIVLLCLVYCVTGIGYALAIIFEPGAAQLWSVLLPVVLTLIATQPKDSDFMKRIADLCYTKWALQAFVIANAERYDKVWLITRCGALKKSDYNLNDWRLCISILILFGVVSRSIAFICMVIFRRK 2231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0813 2231 ProSiteProfiles Pumilio RNA-binding repeat profile. 893 928 IPR001313 GO:0003723
Glsi12g0813 2231 ProSiteProfiles Pumilio RNA-binding repeat profile. 784 819 IPR001313 GO:0003723
Glsi12g0813 2231 CDD ABCG_EPDR 1538 1848 - -
Glsi12g0813 2231 FunFam Pumilio homolog 1 isoform 2 691 1038 - -
Glsi12g0813 2231 SMART pum_5 856 892 IPR001313 GO:0003723
Glsi12g0813 2231 SMART pum_5 784 819 IPR001313 GO:0003723
Glsi12g0813 2231 SMART pum_5 893 928 IPR001313 GO:0003723
Glsi12g0813 2231 SMART pum_5 971 1006 IPR001313 GO:0003723
Glsi12g0813 2231 SMART pum_5 820 855 IPR001313 GO:0003723
Glsi12g0813 2231 SMART pum_5 712 747 IPR001313 GO:0003723
Glsi12g0813 2231 SMART pum_5 929 964 IPR001313 GO:0003723
Glsi12g0813 2231 SMART pum_5 748 783 IPR001313 GO:0003723
Glsi12g0813 2231 MobiDBLite consensus disorder prediction 1427 1441 - -
Glsi12g0813 2231 SUPERFAMILY ARM repeat 694 1029 IPR016024 -
Glsi12g0813 2231 MobiDBLite consensus disorder prediction 1423 1449 - -
Glsi12g0813 2231 ProSiteProfiles Pumilio RNA-binding repeat profile. 856 892 IPR001313 GO:0003723
Glsi12g0813 2231 Pfam Nucleic acid binding protein NABP 367 711 IPR012940 -
Glsi12g0813 2231 Gene3D - 1526 1861 IPR027417 -
Glsi12g0813 2231 ProSiteProfiles Pumilio RNA-binding repeat profile. 712 747 IPR001313 GO:0003723
Glsi12g0813 2231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1540 1859 IPR027417 -
Glsi12g0813 2231 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 692 1032 IPR033133 GO:0003723
Glsi12g0813 2231 ProSitePatterns ABC transporters family signature. 1765 1779 IPR017871 GO:0005524|GO:0016887
Glsi12g0813 2231 Gene3D - 692 1038 IPR011989 -
Glsi12g0813 2231 ProSiteProfiles Pumilio RNA-binding repeat profile. 929 964 IPR001313 GO:0003723
Glsi12g0813 2231 Pfam ABC transporter 1559 1793 IPR003439 GO:0005524
Glsi12g0813 2231 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 157 1031 - -
Glsi12g0813 2231 SMART AAA_5 1566 1842 IPR003593 GO:0016887
Glsi12g0813 2231 ProSiteProfiles Pumilio RNA-binding repeat profile. 965 1006 IPR001313 GO:0003723
Glsi12g0813 2231 CDD Pumilio 707 1028 IPR033712 GO:0003723
Glsi12g0813 2231 ProSiteProfiles Pumilio RNA-binding repeat profile. 820 855 IPR001313 GO:0003723
Glsi12g0813 2231 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1540 1866 IPR003439 GO:0005524
Glsi12g0813 2231 Pfam ABC-2 type transporter 1822 2231 IPR043926 GO:0140359
Glsi12g0813 2231 ProSiteProfiles Pumilio RNA-binding repeat profile. 748 783 IPR001313 GO:0003723
Glsi12g0813 2231 Pfam Pumilio-family RNA binding repeat 898 930 IPR001313 GO:0003723
Glsi12g0813 2231 Pfam Pumilio-family RNA binding repeat 979 1008 IPR001313 GO:0003723
Glsi12g0813 2231 Pfam Pumilio-family RNA binding repeat 754 784 IPR001313 GO:0003723
Glsi12g0813 2231 Pfam Pumilio-family RNA binding repeat 831 854 IPR001313 GO:0003723
Glsi12g0813 2231 Pfam Pumilio-family RNA binding repeat 788 821 IPR001313 GO:0003723
Glsi12g0813 2231 Pfam Pumilio-family RNA binding repeat 716 750 IPR001313 GO:0003723
Glsi12g0813 2231 Pfam Pumilio-family RNA binding repeat 933 967 IPR001313 GO:0003723
Glsi12g0813 2231 Pfam Pumilio-family RNA binding repeat 860 895 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0813 Glsi-ChrGlsi12 25658841 25684760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0813 1760 1844 Calmodulin-binding Proteins AT2G36910 34.483 9.20e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g0813 12 25658841 25684760 Glsi12g0813 12 25658841 25684760 ECH