Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0791 ATGGCTGGGAAGGAAGAGAACCGAATATTTGTTGGAGGGCTGTCTTGGGACGTTTCGGAGCGTCAGCTCGAGCATGCCTTTGGCCGTTACGGCAAAATTATCGAATGCCAGATCATGTTGGAAAGAGATACTGGCCGTCCACGTGGATTTGGGTTTATTACATTTTCAGATCGTCGGGGCATGGAGGATGCAATTAAGGAAATGCATGGACGAGAACTTGGTGATCGCATTATCTCTGTCAATAAGGCCCAGCCCAAAATGGGGGCAGATGATCTAGACCATGGTTATAGGGGTGGCTACTCATCTGGTGGTAGGGGAAGCTATGCAGTGGGAGACAGAGATAGGGTAGGACAGGATGACTGCTTCAAATGTGGGCGTCCTGGGCACTGGGCCCGAGATTGTCCTTCAGCTGGAGGTGGTCGTGGTGGCTCGTTTTCTTCACGTCCTAGGTTTGGAGGTGCTGGGGCCCATGGTGATCGCCTTAGTGGTGAACGTGATCGGTACATTGATGACCGTTATGATAGTGGGCGTTATGGAGATAGGGAACGTCTTGACAGCCGGGATAACAAATATGGCAGTCGAGGTCGCTATGCCAGTGACAGGTACCAAGCTAGTGGAGATCGTTTTGCAAGTGATCGATACAGTGGTTCAGATCGATTCCCACAAAATGGATATGGCAAAGACAGAGCCTATGACAGGTATGGGGGTGCAAGAGGAGGTGGTAATGACAGGTATGGAAGTGGAATGCCGGCACGAGATGAAGGAAAGAGTTATAGGGGTAGGCCTGGTCCTTATGACCGCCCAAGCAGGGGTGGTCGTCCATCTTCATTTGACCGCTATTGA 843 0.5113 MAGKEENRIFVGGLSWDVSERQLEHAFGRYGKIIECQIMLERDTGRPRGFGFITFSDRRGMEDAIKEMHGRELGDRIISVNKAQPKMGADDLDHGYRGGYSSGGRGSYAVGDRDRVGQDDCFKCGRPGHWARDCPSAGGGRGGSFSSRPRFGGAGAHGDRLSGERDRYIDDRYDSGRYGDRERLDSRDNKYGSRGRYASDRYQASGDRFASDRYSGSDRFPQNGYGKDRAYDRYGGARGGGNDRYGSGMPARDEGKSYRGRPGPYDRPSRGGRPSSFDRY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0791 280 ProSiteProfiles Zinc finger CCHC-type profile. 121 136 IPR001878 GO:0003676|GO:0008270
Glsi12g0791 280 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
Glsi12g0791 280 MobiDBLite consensus disorder prediction 133 280 - -
Glsi12g0791 280 Pfam Zinc knuckle 121 136 IPR001878 GO:0003676|GO:0008270
Glsi12g0791 280 Gene3D - 117 144 - -
Glsi12g0791 280 SMART rrm1_1 8 81 IPR000504 GO:0003723
Glsi12g0791 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Glsi12g0791 280 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Glsi12g0791 280 Gene3D - 1 116 IPR012677 -
Glsi12g0791 280 MobiDBLite consensus disorder prediction 159 195 - -
Glsi12g0791 280 SUPERFAMILY Retrovirus zinc finger-like domains 103 142 IPR036875 GO:0003676|GO:0008270
Glsi12g0791 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Glsi12g0791 280 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 272 - -
Glsi12g0791 280 FunFam glycine-rich RNA-binding protein RZ1C 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0791 Glsi-ChrGlsi12 25343755 25348682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0791 9 88 C2H2 Transcription Factor Family AT2G19380 41.250 4.29e-14 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g0791 12 25343755 25348682 Glsi12g0791 12 25343755 25348682 ECH