Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0785 ATGCTTCCTATCACCTGCATTCTCTTCATATGCCTCTTGAGCTCCTTCTCTACCCCCATTAAAGCTTCCTTCAACCTCAGCTTACCCCACCAGCATCCTTACCCTGAAGCTGTGGTTCAGGAAGTTCAAAGCATCCAAACAGAAACAGAGCATCTCTGTTTTCCTACCCTCTGGACCTTACTTCTTGCTTCCTCTTTTGTATTTTCTTCTGGATTTAGACATGGGAAACCCACTTGGGTTTCCTTCGCATTGCATCGTTCCTCATCTAGGTTTATCTCAGCATCCAACAAGAAACAGGCATCTCTGAGAGTCAATGTATCTCTTTCCAGAAGACAACTCGATCAAACTTTCAACTGCCTCACCGGCAACCCAGTCGACGACTGCTGGCGGTGCGACCCGAACTGGGAAGCGAACCGGCAGAAGCTCGCGGACTGCGGCATTGGGTTCGGCCGCGATGCCATGGGGGGTAAAGGCGGCCAGATCTACATCGTCACCGACTCCTCCGATTCCGACCCGGCAAACCCAGTTCCGGGCACCCTCCGGCACGCCGTAATACAAGTCGAGCCCCTGTGGATCGTCTTCTCTTCCTCCATGACCATCACCCTCAAGCATGAGCTCATCTTCAACAGCTTCAAGACCGTCGACGGCCGCGGCGCCAATGTCGCTATCACAGGCCACGGCTGCATCACCATCCAGTCCGTCTCCAACATCATCATCCACAACGTCCACATCCACCACTGTAAGCCCTCTGGGAACACTAACATAAGGTCGAGCCCAACCCATGTCGGGTTTAGGGGCAAATCAGACGGCGACGGAATCTCCATCTTCGCATCCCGGAATATCTGGATCGACCATTGCTCTCTCTCTTACTGCACGGACGGTCTGATCGATGCAATAATGGGGTCCACGGGGATAACGATTTCGAACAACCATTTCGCGCATCACGACGAGGTGATGCTTCTGGGTCACAGCGATAAGAACTTGCCGGACACGGGGATGCAGGTGACTATAGCGTTCAACCACTTCGGGGAGGGGCTAGTGCAGCGTATGCCACGGTGTAGACTCGGGTATATACACGTGGTGAATAATGATTTCACGCAGTGGGAGATGTATGCTATCGGTGGTAGTGCTAACCCCACCATAAACAGCCAGGGTAACCGTTATACTGCGCCGGCGAGTCCCGATGCTAAAGAGGTGACGAAGCGCGTGGACACAGACGAGGGGCAGTGGGCAGATTGGAACTGGAGGACAGATGGGGACGTAATGGTAAATGGAGCATTCTTCGTGCCATCAGGTGCAGGTATGAGCGCTCAGTATGCCAGGGCCTCCAGCGTCGACCCCAAATCCGCCGTCCAAATCGACCAGCTCACTATGAACGCCGGCGTTTTCGGCGATCCCAGGGATAACGGGGACATATTTCCCGGATTCAGCGGCGGTGGGTCCGTCACCGGAGCCACCAGCACTGGCAATGGGGGGTCCGGCGGCAGCGGCAGCGGCGATGATGGGGACTTCTTTGGAATGATATTCAGAGGTGGTAGCAGCGAAGCAGCTCCACCCTCCTTCTCCATTGTTTCGACTTTTTTGTCTCTTCTAATTATTTCCATTTTGTACGCTATCACCAATCATGCTGTCTTATTATCATCACAATGA 1650 0.5364 MLPITCILFICLLSSFSTPIKASFNLSLPHQHPYPEAVVQEVQSIQTETEHLCFPTLWTLLLASSFVFSSGFRHGKPTWVSFALHRSSSRFISASNKKQASLRVNVSLSRRQLDQTFNCLTGNPVDDCWRCDPNWEANRQKLADCGIGFGRDAMGGKGGQIYIVTDSSDSDPANPVPGTLRHAVIQVEPLWIVFSSSMTITLKHELIFNSFKTVDGRGANVAITGHGCITIQSVSNIIIHNVHIHHCKPSGNTNIRSSPTHVGFRGKSDGDGISIFASRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHSDKNLPDTGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPASPDAKEVTKRVDTDEGQWADWNWRTDGDVMVNGAFFVPSGAGMSAQYARASSVDPKSAVQIDQLTMNAGVFGDPRDNGDIFPGFSGGGSVTGATSTGNGGSGGSGSGDDGDFFGMIFRGGSSEAAPPSFSIVSTFLSLLIISILYAITNHAVLLSSQ 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0785 549 SMART amb_all 197 394 IPR002022 -
Glsi12g0785 549 FunFam Pectate lyase 122 464 - -
Glsi12g0785 549 Gene3D - 122 464 IPR012334 -
Glsi12g0785 549 MobiDBLite consensus disorder prediction 480 495 - -
Glsi12g0785 549 PRINTS Pollen allergen Amb family signature 169 194 IPR018082 -
Glsi12g0785 549 PRINTS Pollen allergen Amb family signature 371 390 IPR018082 -
Glsi12g0785 549 PRINTS Pollen allergen Amb family signature 145 162 IPR018082 -
Glsi12g0785 549 PRINTS Pollen allergen Amb family signature 442 465 IPR018082 -
Glsi12g0785 549 PRINTS Pollen allergen Amb family signature 269 290 IPR018082 -
Glsi12g0785 549 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Glsi12g0785 549 PRINTS Pollen allergen Amb family signature 413 437 IPR018082 -
Glsi12g0785 549 PRINTS Pollen allergen Amb family signature 205 221 IPR018082 -
Glsi12g0785 549 PANTHER PECTATE LYASE 18-RELATED 97 463 IPR045032 GO:0030570
Glsi12g0785 549 SUPERFAMILY Pectin lyase-like 115 441 IPR011050 -
Glsi12g0785 549 Pfam Pectate lyase 205 386 IPR002022 -
Glsi12g0785 549 MobiDBLite consensus disorder prediction 475 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0785 Glsi-ChrGlsi12 25156527 25161868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0785 99 546 Polysaccharide Lyase AT3G53190 63.436 0.0 551