Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0776 ATGGACATTCCTTCTTCAAGTGCTGCTGCTTCTCCTTATAGAGGTGTCCGCAAAAGAAAATGGGGCAAATGGGTGTCCGAAATACGTGAACCTGGTACCAAGACCCGGATTTGGTTGGGGAGTTTTGAGACACAGGAGATGGCTGCCGTGGCCTATGATGTTGCTGCTTTATATTTTCGGGGATGTGATCAAGCCAAGCTCAACTTCCCCAAACTCGCTGCCTCCCTCCCCCGCCCGGCGAGCAACAACGCCGATGACATATGCAAGGCAGCACATGAGGGAGCATTGATGCTAAAGACCATTAATAGTAATGGCACAGTGGAGGGAGGTGGCAGGTCTGGCGGGTCCACCACGATGGCGCCAGTCACCGTGGGGTTGTCACCGAACCAAATTCAGGCCATTAATGAGTCACCCTTGTGGATGGAAATGGAAACGTTGGAGGATCCGCATATGATGTTTGCCAATGATGACTTTGAAGACAATGGGTGGGAGAATGTGCAAAATAATTCTCTCTGGGATCCTTAA 525 0.5067 MDIPSSSAAASPYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETQEMAAVAYDVAALYFRGCDQAKLNFPKLAASLPRPASNNADDICKAAHEGALMLKTINSNGTVEGGGRSGGSTTMAPVTVGLSPNQIQAINESPLWMEMETLEDPHMMFANDDFEDNGWENVQNNSLWDP 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0776 174 FunFam Ethylene-responsive transcription factor 2 11 71 - -
Glsi12g0776 174 CDD AP2 13 70 IPR001471 GO:0003700|GO:0006355
Glsi12g0776 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 113 - -
Glsi12g0776 174 Gene3D AP2/ERF domain 12 71 IPR036955 GO:0003700|GO:0006355
Glsi12g0776 174 SUPERFAMILY DNA-binding domain 11 70 IPR016177 GO:0003677
Glsi12g0776 174 PRINTS Ethylene responsive element binding protein signature 35 51 IPR001471 GO:0003700|GO:0006355
Glsi12g0776 174 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Glsi12g0776 174 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Glsi12g0776 174 Pfam AP2 domain 13 61 IPR001471 GO:0003700|GO:0006355
Glsi12g0776 174 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0776 Glsi-ChrGlsi12 24809569 24810093 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0776 11 174 AP2-EREBP Transcription Factor Family AT1G71450 58.683 1.31e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi12g0776 AP2 4.1e-13 CL0081