Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0773 ATGTTTTCTCGGGTCGTAGCAAATGATGCATTACGGGAGAGAGATACGACGCCGTGTTTCAGTCCAACGGAGGTTGGTGATCTCCCACGAGCCACGGCTTCTGTGTTGCCCACCCTTGGACAACTCCTCAAGCATGTCGGAGACGTGCAGAAGGATGCCTCTGGTGACGGCAGCGAGACGCCGGTACACCACGCTCTTGACATGACTGATGCTAAGCTCGAGCCTCGATCGCTGCCTTTCTTGCTCTCGTTCAACAATCTCACATACAGCGTGAAAGTTCGGCAGAAGATGAACTTCTCAAGGCTGTTTTCGGGTCGGAGGAACCATTTCGGAGCGGCGACAGTGGACGGAGAGAGTTTATTCACGAGCACCAAGACTCTACTTAATGATATCTCCGGCGAGGCCCGCGACGGCGAGATCCTCGCCGTTATGGGCGCTAGTGGTTCAGGGAAATCCACTCTGATTGATGCGTTGGCCAATAGAATAGCCAAGGGAAGCTTGAAAGGTAGCGTGACATTGAACGGCGAAGTCTTGGAGTCGCGTCTTTTGAAGGTGATTTCAGCCTATGTGATGCAGGACGATCTTCTCTTTCCCATGCTCACAGTGGAAGAGACTCTGATGTTTGCAGCTGAATTCCGATTGCCTCGTACGCTCTCGAAATCCAAAAAGAAGATGCGAGTACAAGCTTTGATTGACCAGCTCGGCCTCCGAAATGCTGCGAAAACCGTTATCGGCGATGAAGGACACCGCGGGGTCTCCGGCGGCGAACGACGCCGGGTCTCCATCGGCACTGACATAATCCACGACCCCATCATCTTGTTCCTGGACGAACCCACTTCGGGACTCGATTCCACGAGCGCATTCATGGTGGTGAAAGTCTTGCAGAGAATCGCCCACAGCGGAAGCATCGTGATCATGTCCATACACCAACCTAGTTACCGAATCCTCGGCCTACTCGACAGAATGATCTTCTTATCACGCGGACAAACAGTGTTCAGCGGTTCACCCATTCAGCTTCCGCTCTTCTTTGCTGAATTTGGGCACCCAATACCAGAAAATGAGAACCGAACTGAGTTTGCGTTGGACCTGATTCGCGAGCTCGAAGTCTCACCTGGCGGAACCAATAGCTTGGTGGAGTTCAACAAATCCTGGCAGAGCATGAAGCACCCTGAAAGCAGAAACGTTGAGGCCGATCACCATGGATTATCTTTGAAAGGAGCGATTAGTGCAAGCATTTCGAGGGGTAAACTAGTGTCAGGTGCCACAAACACTAATGCAAGCCCAACTTCAATGGTGCCAACATTTGCCAACCCATTTTGGGTTGAGATGGCAAAGCTCTCGAAACGATCCTTTACCAATTCACGTAGAATGCCTGAGCTAATTGGGATTCGAATGGCTGCAGTTTTGGTAACTGGGTTTATTCTCGCCACTATGTTTTGGCAATTAGATAACTCACCCAAAGGGGCGCAAGAAAGGCTTGGCTTCTTCGCATTCGCCATGTCCACCACCTTCTACACAACCGCAGACGCACTCCCTGTTTTTCTCCAAGAGCGATACATTTTCATGAGAGAAACTGCTCACAACGCTTACCGACGATCGTCCTATCTTGTCTCTCATGCTCTTGTAGCATTACCTGCGTTGCTTTTCCTCTCATTGGATTTCGCAGCAACCACGTTTTGGGCAGTGGGACTTGACGGAGGATTATCCGGGTTCTTGTTCTATTTCCTTATCATATTTGCTGCGTTCTGGGCAGGGAACTCCTTCGTCACCTTCCTCTCCGGCGTGGTACCTCATGTGATGTTAGGCTATACAATAGTAGTAGCAATCTTGGCATACTTCTTGCTGTTCAGTGGGTTCTTCATTAACAGAGACAGAATCCCAAGTTACTGGATTTGGTTCCACTATTTGTCTTTGGTGAAATACCCATATGAAGGTGTTCTGCAGAACGAGTTCGATGACCCAGTCAAGTGCTTCGTGAGAGGGGTGCAAATTTTCGATAACTCGCCCCTTGGGGAGGTGCCAAATTCCATGAAAATTAAGCTGTTGGAGAGCATGAGTAACACATTGGGGACGAAGATCACGAGCTCAACATGCTTGACTACAGGTGCAGATATATTGCAGCAGAATGGGGTAACACAGTTAAGCAAGTGGAACTGTTTGTGGATAACAGTGGCTTGGGGTTTCTTGTTTAGGATTCTCTTTTACTTCTCCCTATTGCTGGGCAGCAAGAACAAGAGGAGGTAA 2244 0.496 MFSRVVANDALRERDTTPCFSPTEVGDLPRATASVLPTLGQLLKHVGDVQKDASGDGSETPVHHALDMTDAKLEPRSLPFLLSFNNLTYSVKVRQKMNFSRLFSGRRNHFGAATVDGESLFTSTKTLLNDISGEARDGEILAVMGASGSGKSTLIDALANRIAKGSLKGSVTLNGEVLESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKMRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGTDIIHDPIILFLDEPTSGLDSTSAFMVVKVLQRIAHSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVFSGSPIQLPLFFAEFGHPIPENENRTEFALDLIRELEVSPGGTNSLVEFNKSWQSMKHPESRNVEADHHGLSLKGAISASISRGKLVSGATNTNASPTSMVPTFANPFWVEMAKLSKRSFTNSRRMPELIGIRMAAVLVTGFILATMFWQLDNSPKGAQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETAHNAYRRSSYLVSHALVALPALLFLSLDFAATTFWAVGLDGGLSGFLFYFLIIFAAFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPSYWIWFHYLSLVKYPYEGVLQNEFDDPVKCFVRGVQIFDNSPLGEVPNSMKIKLLESMSNTLGTKITSSTCLTTGADILQQNGVTQLSKWNCLWITVAWGFLFRILFYFSLLLGSKNKRR 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0773 747 ProSitePatterns ABC transporters family signature. 252 266 IPR017871 GO:0005524|GO:0016887
Glsi12g0773 747 SMART AAA_5 137 329 IPR003593 GO:0016887
Glsi12g0773 747 FunFam ABC transporter G family member 6 117 343 - -
Glsi12g0773 747 Pfam ABC-2 type transporter 446 651 IPR013525 GO:0016020|GO:0140359
Glsi12g0773 747 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 64 733 - -
Glsi12g0773 747 Pfam ABC-2 type transporter 309 400 IPR043926 GO:0140359
Glsi12g0773 747 Pfam ABC transporter 128 280 IPR003439 GO:0005524
Glsi12g0773 747 Gene3D - 114 341 IPR027417 -
Glsi12g0773 747 CDD ABCG_EPDR 82 334 - -
Glsi12g0773 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 339 IPR027417 -
Glsi12g0773 747 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 112 352 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0773 Glsi-ChrGlsi12 24768623 24770866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0773 127 312 Calmodulin-binding Proteins AT2G36910 31.217 4.51e-12 68.2