Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0772 ATGGAGGCCCCAGAGGAAGTCTCTTCGGGGGCTAAAGATCAAACCCAAATCGTAAAAGGGAAAAGGACCAAAAGGGTAAGGCCACAATCTCCGATCCCTTTCTCCATGGCTGCGAATTCTTCTCCTGGAAGAGACAGAGGAGAATGCTTCAACGGCGACAATAAAGATGACGACAACAGCAGCAACTATGCCACCACTTCTTCTGAAGAATGTCAAGACAGCACAGAGGAAGAAGAAGACATGGCCCAGTGCTTAATCCTCCTTGCTCAAGGCCAATCCCGGGAATCCCCGAAACATGTCGGGAAAAATTATAGCAGTAGAAAATTCATGGAAGCTAACAAGGCAGGGTTTTGTGTCTACGAATGCAAGACTTGCAGCAGGACCTTCCCTTCGTTTCAAGCACTTGGAGGCCACAGAGCTAGTCATAAAAAGCCGAAGTCGTCAACTTCAATGGCAATTATTGACCAAGAGAAGAAGAACCTCTTGGTATCGTCAGATGAAGAAGAGTTTCAAATCAAGAACAATAACAACCCAATTTCTCTCCATTTGAATAGTCGGGGGAATTTGAATAATGGGTATAATAGTAACAAGAACAAGGTCCATGAGTGCTCTATTTGTGGGGCTGAATTTAGCTCTGGGCAGGCTCTTGGTGGCCATATGAGACGACATAGGACACCAATTGGGACCAGTACGACGTTGACTTCGAACACTATGGAACCAGACGAGGATCAACCGAGAAAACGAAGGAACGTTTTGTCTTTGGATTTAGATCTCAATCTTCCTGCCCCAGATGATGATCAAAGAGAATCCAAGTTTGCCTTTGATCCCAAGCAGCAGCAGCAGCAACAAAAACAAGCAAGTCTGGTTTTCTCTGCTCCTGCTTTGGTGGATTGTCATTACTGA 903 0.4551 MEAPEEVSSGAKDQTQIVKGKRTKRVRPQSPIPFSMAANSSPGRDRGECFNGDNKDDDNSSNYATTSSEECQDSTEEEEDMAQCLILLAQGQSRESPKHVGKNYSSRKFMEANKAGFCVYECKTCSRTFPSFQALGGHRASHKKPKSSTSMAIIDQEKKNLLVSSDEEEFQIKNNNNPISLHLNSRGNLNNGYNSNKNKVHECSICGAEFSSGQALGGHMRRHRTPIGTSTTLTSNTMEPDEDQPRKRRNVLSLDLDLNLPAPDDDQRESKFAFDPKQQQQQQKQASLVFSAPALVDCHY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0772 300 SMART c2h2final6 201 223 IPR013087 -
Glsi12g0772 300 SMART c2h2final6 120 142 IPR013087 -
Glsi12g0772 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Glsi12g0772 300 PANTHER ZINC FINGER PROTEIN ZAT5 61 281 - -
Glsi12g0772 300 Pfam C2H2-type zinc finger 119 145 - -
Glsi12g0772 300 Pfam C2H2-type zinc finger 200 225 - -
Glsi12g0772 300 MobiDBLite consensus disorder prediction 1 76 - -
Glsi12g0772 300 MobiDBLite consensus disorder prediction 225 239 - -
Glsi12g0772 300 SUPERFAMILY beta-beta-alpha zinc fingers 119 223 IPR036236 -
Glsi12g0772 300 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Glsi12g0772 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 223 IPR013087 -
Glsi12g0772 300 ProSitePatterns Zinc finger C2H2 type domain signature. 203 223 IPR013087 -
Glsi12g0772 300 MobiDBLite consensus disorder prediction 217 286 - -
Glsi12g0772 300 Gene3D Classic Zinc Finger 118 223 - -
Glsi12g0772 300 MobiDBLite consensus disorder prediction 56 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0772 Glsi-ChrGlsi12 24757884 24758786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0772 1 300 C2H2 Transcription Factor Family AT5G04390 42.091 1.12e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi12g0772 zf-C2H2_6 6.4e-13 CL0361