Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0764 ATGTCAGCAGAGGAAGCTTGGTCTGCCACTGAAGAAGAAACAATTAAATCTTCAACCCCATTTAGTGAAAAGAGTGGCTATGATTCAAGAACAGGGATTTATCACTCTCTTGTGAGGCTTGGTGCTCAGCAAGAAATCCCTACAAGGCCTGATCTTGACACTGCTAGTTTAGTTCTATCACATTTCCCTCATGCACACCAGGCTGCTGATAAAAGGATTGCGTTTATTGATTCTGCTACTAACCAAAGTGTGAGCTATGGTGAACTTCGTAGGTCTGTTCACTCCCTTGCATCAGGCTTGTTCCATGGACTCGGCGTCCGAAAAGGTGAGGTAGTGTTTCTTCTGTCCCCAAACTCAATCTTGTACCCAACCATATGCCTAGCCGTGTTATCAGTAGGGGCAATTCTGACAACTGCAAATCCCCTTAACACTGAGTCAGAAATTGCAAAGCAAGTGCGAGATTCGGGTGCTAAACTAGCCATTTCAGCACCAGAGGAGCTGCATAAACTGACTTCAACTGGGTTGCCTATAGTTCTCACCTATCGCCCATCTGATGGGGAAATGGTATCAGTTGAAGAGCTGATAGAAGGCTGCTCTAATAATCCACTAGAGTTGCCTCAACTTCACGTTGCCCAATCAGACGCTGCAGCAATACTCTACTCTTCAGGGACAACCGGGATAAGCAAAGGGGTAGTTTTAACTCATGCAAATCTCATCTCCACAATGAGATTACTGGTATGGTCTGCAGATGTAACTTCATCCCGAGATGACGTTTTCTTGGGCTTCATCCCAATGTTTCACATCTACGGGTTGATCTTCTTTGGGTTAGGATTGTTGTGCAGGGGTGTTACATCAGTCATAATGCAGAAATTTGACTTCCAAGCTATGCTTGGGGCAATTCAGAAGCACAGCGTTAATAACCTACCAGCAGTTCCTCCTGTGATTCTTGCTCTGGTGAAATATGGAAGCGAAGCTGGGTTTGACTTGTCAAGCCTAAGAAAGGTGGGTTCAGGTGCTGCACCTTTGAGTAAGGAGCTTGCAGAGGAGTTTAGGAAGAGGTTTCCTTGGGTTGACCTAAGGCAAGGTTATGGACTAACAGAAAGTTGTGGAGCAGCAACCTTTTCCGTATTAGACAAAGATGCTAAAGCTCGGCCCGGCTCGTGTGGGAGTCTACTTCCAACCTTCTGTGCAAAAGTTATGGACATTGACACAGGGAAGCCTTTGCCTCCAAGAAAGGAAGGAGAGTTATGGCTTAAAAGTCCCACTATTATGAAGGAATATCTGGGAAATATGGAGGCAACAGCTGCAACACTTGATTCAGAAGGGTGGTTGAAAACAGGTGATCTTGCTTATATTGATGAAGATGGATTTGTCTACGTACTTGAACGAATAAAGGAGCTGATCAAGCACAATGGATATCAGGTTGCTCCTGCAGAACTGGAATCTGTGCTGCTCAGTCATTCCAATATTCTTGATGTGGCTGTTATACCGGTTGAAGATGTAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAGCTTACAGAAGACCAAGTCATTCAATTTGTTGCTAGCCAGGTGGCCCCATATAAGAAAGTAAGAAGGGTAAGTTTTATTGATACTATTCCAAGGTCAGCTGCAGGCAAAATATTGCGGAAAGATCTTGTTTCACAGAGCAAAAATCTCTTTGTTTCCAAGTTATGA 1719 0.4444 MSAEEAWSATEEETIKSSTPFSEKSGYDSRTGIYHSLVRLGAQQEIPTRPDLDTASLVLSHFPHAHQAADKRIAFIDSATNQSVSYGELRRSVHSLASGLFHGLGVRKGEVVFLLSPNSILYPTICLAVLSVGAILTTANPLNTESEIAKQVRDSGAKLAISAPEELHKLTSTGLPIVLTYRPSDGEMVSVEELIEGCSNNPLELPQLHVAQSDAAAILYSSGTTGISKGVVLTHANLISTMRLLVWSADVTSSRDDVFLGFIPMFHIYGLIFFGLGLLCRGVTSVIMQKFDFQAMLGAIQKHSVNNLPAVPPVILALVKYGSEAGFDLSSLRKVGSGAAPLSKELAEEFRKRFPWVDLRQGYGLTESCGAATFSVLDKDAKARPGSCGSLLPTFCAKVMDIDTGKPLPPRKEGELWLKSPTIMKEYLGNMEATAATLDSEGWLKTGDLAYIDEDGFVYVLERIKELIKHNGYQVAPAELESVLLSHSNILDVAVIPVEDVETGQIPMAYVVRAAGSELTEDQVIQFVASQVAPYKKVRRVSFIDTIPRSAAGKILRKDLVSQSKNLFVSKL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0764 572 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 28 562 - -
Glsi12g0764 572 SUPERFAMILY Acetyl-CoA synthetase-like 57 566 - -
Glsi12g0764 572 FunFam 4-coumarate--CoA ligase 2 466 566 - -
Glsi12g0764 572 Gene3D - 43 465 IPR042099 -
Glsi12g0764 572 Pfam AMP-binding enzyme 69 469 IPR000873 -
Glsi12g0764 572 Gene3D - 466 568 IPR045851 -
Glsi12g0764 572 MobiDBLite consensus disorder prediction 1 27 - -
Glsi12g0764 572 Pfam AMP-binding enzyme C-terminal domain 479 554 IPR025110 -
Glsi12g0764 572 CDD 4CL 46 560 - -
Glsi12g0764 572 MobiDBLite consensus disorder prediction 12 26 - -
Glsi12g0764 572 FunFam Long-chain-fatty-acid--CoA ligase FadD 43 465 - -
Glsi12g0764 572 ProSitePatterns Putative AMP-binding domain signature. 218 229 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0764 Glsi-ChrGlsi12 24624376 24628824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0764 23 566 Monolignol Biosynthesis Gene Families AT4G05160 44.704 1.21e-156 457