Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0751 ATGAACTGTCTTCAGAATCTTCCACGATGCTCGTGTTTACCTCTCCGAAGTTTTAGAAGCCACCAAAGGAAGCCTCTTTGCTCTGCCAATTCACTGGGAATGGCCAATTCTTATGATCCAAATCGAAGTATGGCAGTGAAGTCTGCTTCTGGTTCTATGTCCAGTGCAGAGATGGCTAATAGTGCAAACATAAAGGAGGAAGTGTCTGAGACATATAGTCATAATATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGGATGAACTACACCTTCATCCGTCCAGACTTAATTGTGGGATCATGCCTACAGACTCCAGAAGATGTTGACAAGCTTCGTATAATAGGAGTGAAAACTATATTTTGCTTGCAACAAGATCCAGACCTAGAATATTTTGGAGTTGATATCAATGCCATACGAGAATATGCCAGGTCTTTCAATGACATTCAACATTTGCGAGCTGAGATAAGGGACTTTGATGCATTTGATCTACGGATGAAGCTTCCAACTGTAGTCAGCAAATTGTACAAGGCAATAAATCACAATGGGGGTGTGACGTATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCGGTTGCGTTGGCATATATGTTTTGGGTTCAGGGTTATAAACTTGACGAGGCTAATAGATTGCTCCAGAGCAAAAGGTCATGCTTCCCAAAATTGGATGCGATAAAAAGTGCAACAGCCGACCTTCTTACAGGCCTCAGAAAAAGTCTTATCACTTTGACATGGGAAGACAGCAATTGCTCTTCAGTGGAAATTTCTGGGCTTGATATTGGATGGGGCCAGAGAATCCCCCTTCGCTTTGATGATGAACAGGGTTTGTGGGTTCTTGAGAGGGAATTGCCTGAAGGACGTTATGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATGAGTATGAGATTGTGACCTCTCCCAACAATGATGGCCATGTCAATAATTTTGTTCAAGTCCTTGATGATTCAAACGGTACTAATGCTTCTATCAGGAAGAGGTTGACTGGCGATGATCCTGATCTCACAAAGGACGAACGACTGAGAATAAGACTGTTTCTTGAGGCTTGTCCTGATGAAGAACACTGA 1128 0.4282 MNCLQNLPRCSCLPLRSFRSHQRKPLCSANSLGMANSYDPNRSMAVKSASGSMSSAEMANSANIKEEVSETYSHNMTEAMGAVLTYRHELGMNYTFIRPDLIVGSCLQTPEDVDKLRIIGVKTIFCLQQDPDLEYFGVDINAIREYARSFNDIQHLRAEIRDFDAFDLRMKLPTVVSKLYKAINHNGGVTYIHCTAGLGRAPAVALAYMFWVQGYKLDEANRLLQSKRSCFPKLDAIKSATADLLTGLRKSLITLTWEDSNCSSVEISGLDIGWGQRIPLRFDDEQGLWVLERELPEGRYEYKYIVDGEWTCNEYEIVTSPNNDGHVNNFVQVLDDSNGTNASIRKRLTGDDPDLTKDERLRIRLFLEACPDEEH 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0751 375 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 86 268 - -
Glsi12g0751 375 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 248 338 - -
Glsi12g0751 375 SMART dsp_5 93 243 IPR020422 GO:0006470|GO:0008138
Glsi12g0751 375 SUPERFAMILY E set domains 252 334 IPR014756 -
Glsi12g0751 375 Gene3D Immunoglobulins 248 338 IPR013783 -
Glsi12g0751 375 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 373 - -
Glsi12g0751 375 CDD E_set_AMPKbeta_like_N 253 333 - -
Glsi12g0751 375 Pfam Glycogen recognition site of AMP-activated protein kinase 254 335 IPR032640 -
Glsi12g0751 375 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 90 235 IPR029021 -
Glsi12g0751 375 ProSiteProfiles Dual specificity protein phosphatase domain profile. 93 250 IPR020422 GO:0006470|GO:0008138
Glsi12g0751 375 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 228 IPR000387 GO:0016311|GO:0016791
Glsi12g0751 375 Pfam Dual specificity phosphatase, catalytic domain 136 231 IPR000340 GO:0008138|GO:0016311
Glsi12g0751 375 CDD DSP_laforin-like 92 239 IPR045204 GO:0019203
Glsi12g0751 375 Gene3D Protein tyrosine phosphatase superfamily 86 364 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0751 Glsi-ChrGlsi12 24420611 24431199 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0751 92 374 Protein tyrosine phosphatase (PTP) family AT3G52180 68.551 2.19e-152 429