Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0749 ATGTTTCATGGCTACGGCTTTTGCGAGAAGAGGAGATTTGACCCCCAGACGTCGGTGGCTCTCTCAGCTCAGTTTCTTGCCAAGATGGGTGAGGGGGAGGACAATGAAACTATTGGAAGGACCAAGCCTTCCACTGAACAGGATATTTCTGACGAGCTAGATTTGAAAATAAAGAAGTATCTCAGAGGAGAAGGTGCAAATTTAGAGGCTTTGAAAGATAAAAAGCTGAAGGGTCAACTTGCTATTAGAGAAGAATTATATGGAAAATCTGCAAAAGCTGCTGCCAAGGCTGATGAGTGGCTTAAGCCCAGTGAGGGAGGTTTTCTGGAGGCCGAAGGCATAGAGAAGACATGGAGGATCAAACAGGAGACAATAGCTAATGAAGTAGATATCCTAAGCTCAAGGAACCAATATGATATTATTTTACCAGTACTTGGTCCATACACTCTTGATTTTACTTCAAGTGGCCGATATATGGTTGTTGGAGGGCGTAAGGGGCATCTTGGAATTGTGGACAATATGACATTGAGCCTAGTCAAAGAGTTTCAGGTTAGAGAAACAGTACGTGATGTTGTATTTTTACACAACGAGCTGTTTTTTGCTGCTGCCCAGAAAAAGTATCCCTACATATATAACTGTGATGGCACAGAGCTTCACTGTCTTAAGGAACATGGTGCTGTGTTAAGGCTTCAGTTTTTAAAAAATCACTTTCTCTTGGCTTCAATAAACAAATTTGGGCAGCTTCACTACCAAGATGTTACAATGGGTGCCATGGTTAGTAATTTTCGAACTGGTTTAGGTCGTACTAATGTGATGCAAGTGAACCCCTTCAACAGTGTTGTTGCTTTGGGTCATTCCGGTGGGACTGTCACAATGTGGAAGCCTACAAGCTCTGCTCCTCTTGTCAAGATGCTGTGTCATCATGGTCCTGTCTCAGCACTGGCATTTCACTCAAATGGCCAGTTAATGGCCACTGCTGGGAAAGACAAAAAAATAAAGCTTTGGGACTTGAGGAAATTTGAGGTTCTTCAGACATTACCTGGCCATGCACATACTTTGGATTTTAGTCAAAAAGGCTTACTTGCTTGTGGTACTGGATCATTTATACAAGTTCTGAATGATCCTTCTGGTAGTCGGAATTATTCTAGATATATGACTCATTCCATGGTTAAAGGTTACCAGATAGGAAAGTTAGTATTTCGACCATATGAAGATGTTCTTGGCATAGGGCATTCGATGGGTTGGTCCAGTATTCTTATTCCAGGATCAGGAGAGCCTAACTTTGACTCCTGGGTAGCCAATCCATTTGAAACATCTAAACAGAGAAGAGAAAAGGAAGTCCGATCTCTTCTTGATAAGCTGCCGCCGGAGACAATCATGTTGGACCCCAGCAAAATTGGTACTGTGAAACCGACAAGGAAAGAGAAGCCAACAAAACAGGAGAGGGAGGCCGAGGAGGAAGCTGCTGTTGAAGCTGCCAAGGACATCAAAATAAAGAAGAAAACAAAAGGAAGAAATAAGCCAAGCAAGAAGACAAAGAAAAAACAGGAGATTATAGCAAGAGCGAAGAGGCCTTTCTTGGAGCAACAGATTAAGGAAGAAGAAATGTCCAGAAAGAAGCAGAGAGTTAGTGAAGAAGTTCGTTTACCAAAATCTTTAGAGCGGTTTGTTAATAAAAAGGCATCATCTTGA 1692 0.4214 MFHGYGFCEKRRFDPQTSVALSAQFLAKMGEGEDNETIGRTKPSTEQDISDELDLKIKKYLRGEGANLEALKDKKLKGQLAIREELYGKSAKAAAKADEWLKPSEGGFLEAEGIEKTWRIKQETIANEVDILSSRNQYDIILPVLGPYTLDFTSSGRYMVVGGRKGHLGIVDNMTLSLVKEFQVRETVRDVVFLHNELFFAAAQKKYPYIYNCDGTELHCLKEHGAVLRLQFLKNHFLLASINKFGQLHYQDVTMGAMVSNFRTGLGRTNVMQVNPFNSVVALGHSGGTVTMWKPTSSAPLVKMLCHHGPVSALAFHSNGQLMATAGKDKKIKLWDLRKFEVLQTLPGHAHTLDFSQKGLLACGTGSFIQVLNDPSGSRNYSRYMTHSMVKGYQIGKLVFRPYEDVLGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLDPSKIGTVKPTRKEKPTKQEREAEEEAAVEAAKDIKIKKKTKGRNKPSKKTKKKQEIIARAKRPFLEQQIKEEEMSRKKQRVSEEVRLPKSLERFVNKKASS 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0749 563 FunFam Os01g0183100 protein 213 407 - -
Glsi12g0749 563 SMART WD40_4 255 294 IPR001680 GO:0005515
Glsi12g0749 563 SMART WD40_4 339 373 IPR001680 GO:0005515
Glsi12g0749 563 SMART WD40_4 175 212 IPR001680 GO:0005515
Glsi12g0749 563 SMART WD40_4 133 172 IPR001680 GO:0005515
Glsi12g0749 563 SMART WD40_4 297 336 IPR001680 GO:0005515
Glsi12g0749 563 ProSitePatterns Trp-Asp (WD) repeats signature. 323 337 IPR019775 -
Glsi12g0749 563 Gene3D - 264 384 IPR015943 GO:0005515
Glsi12g0749 563 Gene3D - 130 263 IPR015943 GO:0005515
Glsi12g0749 563 PANTHER WD-REPEAT PROTEIN BING4 35 557 IPR040315 -
Glsi12g0749 563 MobiDBLite consensus disorder prediction 461 546 - -
Glsi12g0749 563 SUPERFAMILY WD40 repeat-like 146 411 IPR036322 GO:0005515
Glsi12g0749 563 MobiDBLite consensus disorder prediction 513 546 - -
Glsi12g0749 563 Pfam WD domain, G-beta repeat 305 336 IPR001680 GO:0005515
Glsi12g0749 563 SMART BING4CT_2 383 463 IPR012952 -
Glsi12g0749 563 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 345 IPR001680 GO:0005515
Glsi12g0749 563 Pfam BING4CT (NUC141) domain 384 462 IPR012952 -
Glsi12g0749 563 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 338 - -
Glsi12g0749 563 MobiDBLite consensus disorder prediction 468 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0749 Glsi-ChrGlsi12 24400516 24407188 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0749 146 359 U-box Gene Family AT1G04510 24.229 1.22e-10 62.0