Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0685 ATGCATGGTACTGTATCTGATACCAGCCATAATCGGTTTCAGGGGACTGTTTCGGTGAGAGAATCGCCGTTTCCGGCAGCTGAATTGGGTGGCAATTTGCATCCCATGACCGTGGCTGATGAGTTTGGTCACTGGAATGGACAAGCTTCGTTCAAAAGTTGGGCGAAGCAAACTGAGGAGAGCTACCAGTTGCAGCAGGCTCTGGCGCTTCGTCTTTCGTCGCAGGCTGCTTGTGCGGATGATCCTAATTTCTTAGCCATGGAATCGAGCTCCTCCTCCAGCTCGGCTGAGGCAGTTTCACATCGATTCTGGGTCAATGGTTGTTTGCATTACTCAGACAAAATTCCAGATGGATTTTATCATATACATGGGATGGATGCATATTCATGGACAATAAGTACTGATATGCAGAATGTTGGTCTGATTCCATCATTAGAATCACTGGTGTCAGTTGAACCCTGTGATGATTTGTCAATTGTCGTGGTTGCTATTGATAAATCAAGAGATCCTAGATTGAGAGACCTACTAAGTGGGGTACGTAGTCTTTCTAGTAACTGGACCCCTACAAAGGACGTAATTGATCATCTTGCAAATCTTGTTTGCAGTAGGATGGGGGGTGGAGCTTCTGAGGAAAACTTAATTCCATGCTGGAAGGAGAGCACTAAAATTCTAAAAGATTGCCTGCATTCTGTCATTCTTCCAATTGGAAACTTACCTGTTGGCCTTTGTGTCCATCGAGCATTGCTCTTTAAAGTGTTAGCTGACTCAGTCAACCTCCCATGTCGAATTGCCAACGGCTGCAAGTATTGTAGGAAGGATGTAGGTGCCTCATGTGTAGTGCAATTTGGTCCTCACAGGGAGTATTTGATTGATTTGGTTGGAAGGCCGGGGGTTATGAGCCAACCTGATTCTTCACTAAATTCTGCATCTTCAGTATTAATTGCTTCACCGCTATGTCATCCCAAGTTCAAGCCAGCCGAAACAACTGAATATTCAAAGACATTAGCCCAATTGTATTTCTTGGATTGTCAGGGGCTACATCTTGTATTTGATACTAATTCAGGTGGTGCTGTTGATCACAGTGATGGAATGGGCCTAAAGCCAACTGAAGGTTTTAATACAAATTACACAGGCGGGAATGGTCCTCTGACTGCTTCGAAAGAGTATGCATCATTCAGTGAAGCAAACCAGTTAGTTATGGATAGTCCAAGTCATGTAGTTGATCTTGATGATGATGATCTGGACATTCCATGGGGTGAACTTTTTCTGAAGGAGAAAATTGGAACAGGTTCATTTGGAACTGTCCACCATGCAGATTGGCGTGGTTCTGAGGTTGCTGTGAAAATTCTTAGGTTGCAAGGTTTTGATGCAGAACGATATCAAGAATTTAAAAAGGAGGTCTCACTCATGAAACGTCTGAGGCATCCAAACATTGTTCTTTTAATGGGTGCAGTTATTCAACAACCCAACTTGTCCATAGTGACAGAATATTTATCAAGAGGTAGCTTGTATGAACTACTGCACATGGCAGATGCTAGATTAGTTCTCAGTGAGAAGCGTCGTTTAAGTATGGCTTATGATGTGGCAAGTGGGATGAATTATCTTCATCAAATGAGACCTCCCATTGTTCACAGAGATCTGAAGTCTCCAAACCTTTTGGTGGATGATACATATACAGTTAAGGTATGTGACTTTGGTCTCTCCCGTACAAAGGCAAACACATTTCTTTCGTCTAAAACAGCTGCCGGCACTCCCGAGTGGATGGCACCAGAAGTCATCCGTGGTGAACAATCAAATGAAAAATGCGACGTATTCAGCTTTGGTGTAATCTTGTGGGAACTAGTGACCCTACAACAACCTTGGAGAAATTTAAATCCTTCACAGGTTGTTGCAGCAGTAGGTTTTATGGACAAACGGCTAGAGATTCCAAGCTATGTGAACCCTCAAGTGGCTGCCTTGATTGAGCTCTGCTGGGCCACTGAACCCTGGCGACGCCCTTATTTCTCGTATATTAGGAACTGTTTGAAGCAAATGATTTCCGATGCTCAAGAGTGA 2055 0.437 MHGTVSDTSHNRFQGTVSVRESPFPAAELGGNLHPMTVADEFGHWNGQASFKSWAKQTEESYQLQQALALRLSSQAACADDPNFLAMESSSSSSSAEAVSHRFWVNGCLHYSDKIPDGFYHIHGMDAYSWTISTDMQNVGLIPSLESLVSVEPCDDLSIVVVAIDKSRDPRLRDLLSGVRSLSSNWTPTKDVIDHLANLVCSRMGGGASEENLIPCWKESTKILKDCLHSVILPIGNLPVGLCVHRALLFKVLADSVNLPCRIANGCKYCRKDVGASCVVQFGPHREYLIDLVGRPGVMSQPDSSLNSASSVLIASPLCHPKFKPAETTEYSKTLAQLYFLDCQGLHLVFDTNSGGAVDHSDGMGLKPTEGFNTNYTGGNGPLTASKEYASFSEANQLVMDSPSHVVDLDDDDLDIPWGELFLKEKIGTGSFGTVHHADWRGSEVAVKILRLQGFDAERYQEFKKEVSLMKRLRHPNIVLLMGAVIQQPNLSIVTEYLSRGSLYELLHMADARLVLSEKRRLSMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDTYTVKVCDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGEQSNEKCDVFSFGVILWELVTLQQPWRNLNPSQVVAAVGFMDKRLEIPSYVNPQVAALIELCWATEPWRRPYFSYIRNCLKQMISDAQE 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0685 684 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 80 678 - -
Glsi12g0685 684 Pfam Ethylene-responsive protein kinase Le-CTR1 96 299 - -
Glsi12g0685 684 Pfam Protein tyrosine and serine/threonine kinase 423 675 IPR001245 GO:0004672|GO:0006468
Glsi12g0685 684 SUPERFAMILY Protein kinase-like (PK-like) 402 674 IPR011009 -
Glsi12g0685 684 ProSiteProfiles Protein kinase domain profile. 421 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0685 684 ProSitePatterns Protein kinases ATP-binding region signature. 427 448 IPR017441 GO:0005524
Glsi12g0685 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672|GO:0006468
Glsi12g0685 684 FunFam Serine/threonine-protein kinase isoform 1 411 499 - -
Glsi12g0685 684 CDD STKc_MAP3K-like 427 671 - -
Glsi12g0685 684 PRINTS Tyrosine kinase catalytic domain signature 602 624 IPR001245 GO:0004672|GO:0006468
Glsi12g0685 684 PRINTS Tyrosine kinase catalytic domain signature 646 668 IPR001245 GO:0004672|GO:0006468
Glsi12g0685 684 PRINTS Tyrosine kinase catalytic domain signature 495 508 IPR001245 GO:0004672|GO:0006468
Glsi12g0685 684 PRINTS Tyrosine kinase catalytic domain signature 536 554 IPR001245 GO:0004672|GO:0006468
Glsi12g0685 684 PRINTS Tyrosine kinase catalytic domain signature 583 593 IPR001245 GO:0004672|GO:0006468
Glsi12g0685 684 Gene3D Transferase(Phosphotransferase) domain 1 500 684 - -
Glsi12g0685 684 FunFam Serine/threonine-protein kinase CTR1 500 684 - -
Glsi12g0685 684 SMART serkin_6 421 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0685 684 Gene3D Phosphorylase Kinase; domain 1 414 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0685 Glsi-ChrGlsi12 23295591 23305223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0685 54 682 MAP Kinase Kinase Kinase AT5G03730 58.931 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Glsi12g0685 PK_Tyr_Ser-Thr 1.3e-67 CL0016