Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0680 ATGGGTGACCATTATGGTATGCCAGATCTCCGGCCGTTCATGTCAGGAAGAAACCATGAACTCACAAACCCAGAACTCTCAGAGCCACTACTTTCTGTCCAGCAAGGTGCTATACTACTACCACCCAATAGCTACGACCTCACCAGGGCTGAAGAGGTTTCCTCTCGTGGGTTCTCTGAGTTTGTAGCTTCTAGTACCGTGCTCAATCCCACAACAAACACTCCTACTATTGCTCTCGCTAATTCTGCAGATCATCATGCTACTGCTACTACTGCATTTTCTGCAGAAAAGGGATGGGCTACTGGATTTGAGAGTGGAAACAACAGGTGGCTTAGACAAGAAACTCTTTCTCTTCTAGACGTCAGATCTCGTCTTGATTCCAAGTTCAGAGACACTAATCACATAGGACCTTTGTGGAATGAAGTTTCCAGGATAATATGGGAGGAATATGGGTACCAAAGAAGTGGAAAGAAGTGCAAAGAGAAGTTTGTGAATTTGTACAAGTATTACAAGAAGACCAAGGATTGCAAAGCTAGTAAACAAGATGGCAAGCACTATAGATTCTTCCGCCAGCTTGAAGCTATATGTGGGCAAAGAATTGATGCCTCTACTTCAGAAATCATCCACCATGCCAGAAACTCTAATATTGCTCCCTATAATCAAACTCCAACCTTCCAAACTATTAGTACTCAGCAAGACACTGAACAACTTCATTCCCCTAGTTTCTCTAACTCATCGAAATTTACGACATCCTCGTCTGAAAACAATGACGAGGAGAATGATCTTTCAGACAGCGCAAGGGAGAAGAAGGGAAAGAGAAGCAGGAGAGCTGTGGTTGAGGAGCTCGTGGACTCTCACATGACGAAGGTTATGGAGGCTCAGGATGCTTGGATGGAGAAGATCTTGAGTGCTGTTGAACAAAGAGAAGTAATGGCTTCTAAGGAAGAGGAAAGAAAGAGAGAAAAGTCAATGAGGTTTGTTAGAGAAGCACATGAACGATGGGCCAGACAGCGAGCTTGGATTGAAGCAAGAGATGCTGCATTAATGGAGATTATTGTGAAGAAGCATATAGAAAATAGAGAAAATTGCATTTATCCACAATGA 1104 0.4321 MGDHYGMPDLRPFMSGRNHELTNPELSEPLLSVQQGAILLPPNSYDLTRAEEVSSRGFSEFVASSTVLNPTTNTPTIALANSADHHATATTAFSAEKGWATGFESGNNRWLRQETLSLLDVRSRLDSKFRDTNHIGPLWNEVSRIIWEEYGYQRSGKKCKEKFVNLYKYYKKTKDCKASKQDGKHYRFFRQLEAICGQRIDASTSEIIHHARNSNIAPYNQTPTFQTISTQQDTEQLHSPSFSNSSKFTTSSSENNDEENDLSDSAREKKGKRSRRAVVEELVDSHMTKVMEAQDAWMEKILSAVEQREVMASKEEERKREKSMRFVREAHERWARQRAWIEARDAALMEIIVKKHIENRENCIYPQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0680 367 MobiDBLite consensus disorder prediction 260 276 - -
Glsi12g0680 367 FunFam Trihelix transcription factor GT-2 110 172 - -
Glsi12g0680 367 CDD GT1 108 174 - -
Glsi12g0680 367 PANTHER FI21293P1 83 354 - -
Glsi12g0680 367 ProSiteProfiles Myb-like domain profile. 108 167 IPR001005 -
Glsi12g0680 367 MobiDBLite consensus disorder prediction 229 256 - -
Glsi12g0680 367 Pfam Myb/SANT-like DNA-binding domain 108 195 IPR044822 -
Glsi12g0680 367 Gene3D - 110 172 - -
Glsi12g0680 367 MobiDBLite consensus disorder prediction 229 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0680 Glsi-ChrGlsi12 23157369 23159774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0680 109 352 Trihelix Transcription Factor Family AT5G03680 45.276 8.92e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi12g0680 Myb_DNA-bind_4 5.5e-15 CL0123