Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0679 ATGGGTCACCAGTATAATCTACCGGATCTCCGGCCTTTCATGTCAGGACGAAACCATGAACTCACAAATCCAGAACTTCCAGAGCCACTACTATCAATCCAGCAAGGTGCTATACTACTACCACCCAATGGCTACGACCCCACCATGGCTGAAGAGGGTTTCTCTCGTGGGTTCTCTCAGTTTGAAGCTTCTAGTGCTGTATTCAATCCCACAACAAACACTCCTACTATTGCTCTCACTAATTCTGCAGGTCATCATGCTACTACTACTACTGCATTTCCTGCAGAAAAGGGATGGCTTACTGGATTTGAGAGTGGAAACAACAGGTGGCCTAGACAAGAGACTCTTTCTCTTCTAGACATCAGATCTCGTCTTGATTCCAAGTTCAGAGACAGTAATCATAAAGGACCTTTGTGGAATGAAGTTTCCAGGATAATGGAGGAGGAATATGGGTACCAAAGAAGTGGAAAAAAGTGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGATTGCAAAGCTAGCAAACAAGATGGAAAGCACTATAGATTCTTCCGCCAGCTTGAAGCTATATGTGGGCAAAGAACGATTCATTCCTCTACTTCGGAAATCATCCGCCATGCCAGAAACCCTAATATTGCTCCTTATAATCAAACTCCAACCTTCCAAACTATTAATAACCAGCAAGACACTGAACTTCTTCATTCCCCTAGATTCTCTAACTCATGGGAATTCGCGATATCCTCGTCCAAAAAAAACGGCAAGGAGAATGATCTTTCAGACATGGCGAGGGAGAAGAAGGGAAAGAGAAGCTGGAGAACTGTGGTTGAGGAGCTTGTGGACTCTCACATGAGGAAGGTTATGGAGGCTCAGGATGCTTGGATGGAGAAGATCTTGAGTGCTGTTGAACAAAGAGAAGTAATGGTGTCTAAGGAAGAGGAAAGAAAGAGAGAAGAGTCAATGAGGTTTGTTAGAGAAGCACATGAACTATGGGCCAGACAGCGAGCTTGGATTGAAGCAAGAGATGCTGCATTAATGGAGATTATTGTGAAGAAGCATATAGAAAATAGGGAAAATTGCATTTATCCCCGCTGA 1107 0.4327 MGHQYNLPDLRPFMSGRNHELTNPELPEPLLSIQQGAILLPPNGYDPTMAEEGFSRGFSQFEASSAVFNPTTNTPTIALTNSAGHHATTTTAFPAEKGWLTGFESGNNRWPRQETLSLLDIRSRLDSKFRDSNHKGPLWNEVSRIMEEEYGYQRSGKKCKEKFENLYKYYKKTKDCKASKQDGKHYRFFRQLEAICGQRTIHSSTSEIIRHARNPNIAPYNQTPTFQTINNQQDTELLHSPRFSNSWEFAISSSKKNGKENDLSDMAREKKGKRSWRTVVEELVDSHMRKVMEAQDAWMEKILSAVEQREVMVSKEEERKREESMRFVREAHELWARQRAWIEARDAALMEIIVKKHIENRENCIYPR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0679 368 ProSiteProfiles Myb-like domain profile. 108 167 IPR001005 -
Glsi12g0679 368 PANTHER FI21293P1 82 355 - -
Glsi12g0679 368 Pfam Myb/SANT-like DNA-binding domain 108 195 IPR044822 -
Glsi12g0679 368 CDD GT1 108 174 - -
Glsi12g0679 368 Gene3D - 110 172 - -
Glsi12g0679 368 FunFam trihelix transcription factor PTL-like 110 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0679 Glsi-ChrGlsi12 23150843 23154296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0679 109 353 Trihelix Transcription Factor Family AT5G03680 46.693 1.56e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi12g0679 Myb_DNA-bind_4 7.4e-19 CL0123