Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0676 ATGATATCTTCTGGGGTGAACTTGGTGATGACTGTGATTGGATTTGCGGTGAGCACCATGTTCATCGTTTTCGTTTGCACTAGACTTGTCTGTGCTCGAATTCACTTGAATGCTTCACGGCGATCCTTCTCTGTTGCTTCCAGATCCAATCTCAATATGATGGAACGGGGTTTTCATGGTCTTGAACCTCTAGCAGTAGCGAACTTCCCGACAAAGAAGTACAGCGATGAATTTTTTTCTACAGCAGAAAATTCTCAATGTGCTGTTTGTCTTTCGGATTACCAAGGTGAAGATGTACTGCGCATCCTCCCCAATTGTAAACACTTCTTCCATGTGACCTGCATAGATATATGGCTGCAGCAGCATTCCACTTGTCCTGTTTGTCGGATATCATTGCGCCAATTTTCTGAGAGGAAGCGTTTAATGCAACCCTTATTCAGCTCTGCCATTCGATTTAATTTCGGTGTGGAATCCTTTGACACTCGTCCGTATAATTGTATAATGGCTAATGATGGGTTATCATCAAGAAACCCTGACATGCATGGGGTGAACTCTATACAAGAGGATAATTATGCATCCGATGGTGGTGGAGCAGTTGTGAGGGAGAATGTCACCTGTTTAAGTCATGGCGACCAGACCATGAAAGATGCAGGAAACAACCTTGTAGAGAGCCCCTCAAATCCCTAA 687 0.4396 MISSGVNLVMTVIGFAVSTMFIVFVCTRLVCARIHLNASRRSFSVASRSNLNMMERGFHGLEPLAVANFPTKKYSDEFFSTAENSQCAVCLSDYQGEDVLRILPNCKHFFHVTCIDIWLQQHSTCPVCRISLRQFSERKRLMQPLFSSAIRFNFGVESFDTRPYNCIMANDGLSSRNPDMHGVNSIQEDNYASDGGGAVVRENVTCLSHGDQTMKDAGNNLVESPSNP 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0676 228 CDD RING-H2_EL5-like 86 129 - -
Glsi12g0676 228 SMART ring_2 87 128 IPR001841 -
Glsi12g0676 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 134 IPR013083 -
Glsi12g0676 228 SUPERFAMILY RING/U-box 80 134 - -
Glsi12g0676 228 FunFam E3 ubiquitin-protein ligase ATL6 49 135 - -
Glsi12g0676 228 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Glsi12g0676 228 PANTHER OS11G0150450 PROTEIN 1 188 - -
Glsi12g0676 228 Pfam Ring finger domain 86 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0676 Glsi-ChrGlsi12 23114905 23117784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0676 8 132 C3H Transcription Factor Family AT2G34990 33.846 2.09e-19 83.2