LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g0654	ATGCAGTCATCCGCCGGCGGATTCGAAAATATCAGTTGCAACACTATCATCGCCACCGAGCAATCATCTACCGACAAACTCTCCGGCGACTTCGACATCCCCACCGCGACAATTCAATCATCCGCGGACTTCGACAGTCTAAGTCGCAACCCCACCGCCTCTGCCACTTCCACAATGCGATCATCTGCCGACGAAATCTCCGGCGACTTCGACAATCTCAGTCGCAATCCCACCGCTGTCACCACTACGGCAGTGCAATCATCTGCCGACGAACTCTCCGGCGACTTCGACAATCTCAGTCGCAATCCTACCTCTGCCGCAGTGCAATCATTCGCCGACGAACTCTCCGGCGAATTCGACAATCTCATTCGCAATCCCACCGCTGCCACCACTGCCGCGGTGCAATCATCCGCCGACGAAATCTCCGGCGACTTCGACAATCTCAGTCGCAATCCCACCGCTGCCACCACTGCCGCAGTGCAATCATCAGCCGACGAACTATCCGGCGACTTCGACAATCTCAGTTGTAATCCCACCACCGCCATTATCAAAATGAAGCACAGTTCAAGCTCAGGCCATCCTCAAGCACCATCCTCGTCGGACCCTCGTTGGGACGCAATTCATCGCGTGAAATCCAACGCGTCGAAATCGAACCCCTCGTTGTGCATGGACGATCTCCGGTTCGTGCAGCGCGTGGGAAGCGGCGACATCGGGAGCGTGTACCTGGTGGAGCTGAAAGGCTCCTCGGAAGGGTGCGTGTTCGCGGCGAAGGTGATGGACAAGGAGGAGCTAGTGAGTAGGAAGAAGGAGGGTAGAGCAAGGACAGAGAGGGAAATATTGGAAATGTTGGACCACCCGTTCTTACCCACACTTTATGCCACGATCGAGTCCTCGCGGTGGTCTTGTTTGCTGACGGAGTTCTGCGCCGGCGGCGACCTCCATCTCCTCCGCCAACGCCAACCTCTCAAGCGCTTCCACGAAGCCGCCGCACGATTCTATGCATCAGAAGTAGTGATTGCTTTGGAGTACCTTCACGTCATGGGGATAATCTACCGTGATTTGAAGCCTGAAAACGTGCTTATAAGATCGGACGGTCATATAATGCTCACAGATTTTGATCTCTCATTGAAAGGCCATTATTCCTCCTCATCACCCGCTCAAATTGTATTTGATCAAGGACCACCAACCCACACCAAGCAATATCCCAAGGACCAATCCTCCTTCGCCATGTCATCTTGCATCTTACCCAATTGCATTGTGCCATCTGTCTCATGCCTCCGCCCTAAACGCAGTCGCAAGAAGAGGTCCACCCGTTGTGGGTCCCTTGAAATTATAACCGAGCCAATAGCAATTCGGTCCATGTCTTTTGTTGGGACCCATGAGTATTTGGCGCCAGAGATAGTTTCCGGTGAAAGCCACGGCAACGCCGTTGATTGGTGGACACTCGGAGTATTTATGTTTGAGATGTTGTACGGGATCACACCTTTCAAAGGGCTCGACCATGAGCTAACTTTGGCTAACATAGTGGCTCGAGCCCTTGAGTTCCCTAAGGAACCCATCGTCTCTGGACCAACCAAAGATTTGATAGCACAACTATTGGTTAAGGACCCCACAAAACGATTAGGGTCCACAATGGGTGCCACAGCTATAAAGCACCATCCCTATTTTAATGGAGTTAACTGGGCATTGTTGAGGTGTGTGTCACCTCCATACACACCGCCACCTGCGACGGTGGTGTACGAAGACTTGGTTCAATTCCATAATGAAGCTGGTCATGTTCCAAGTTGTTACTTTGGAGATGTCAAAAGTAAGTTTCATTTACTTGTGAAGAATAAGGGCCGAAAGGATCGAATTATAGGTCACTTTACCATGTCAAAGGCTATTTCAACTCAAAAACTTAAACATTTAAACTCATGA	1917	0.5123	MQSSAGGFENISCNTIIATEQSSTDKLSGDFDIPTATIQSSADFDSLSRNPTASATSTMRSSADEISGDFDNLSRNPTAVTTTAVQSSADELSGDFDNLSRNPTSAAVQSFADELSGEFDNLIRNPTAATTAAVQSSADEISGDFDNLSRNPTAATTAAVQSSADELSGDFDNLSCNPTTAIIKMKHSSSSGHPQAPSSSDPRWDAIHRVKSNASKSNPSLCMDDLRFVQRVGSGDIGSVYLVELKGSSEGCVFAAKVMDKEELVSRKKEGRARTEREILEMLDHPFLPTLYATIESSRWSCLLTEFCAGGDLHLLRQRQPLKRFHEAAARFYASEVVIALEYLHVMGIIYRDLKPENVLIRSDGHIMLTDFDLSLKGHYSSSSPAQIVFDQGPPTHTKQYPKDQSSFAMSSCILPNCIVPSVSCLRPKRSRKKRSTRCGSLEIITEPIAIRSMSFVGTHEYLAPEIVSGESHGNAVDWWTLGVFMFEMLYGITPFKGLDHELTLANIVARALEFPKEPIVSGPTKDLIAQLLVKDPTKRLGSTMGATAIKHHPYFNGVNWALLRCVSPPYTPPPATVVYEDLVQFHNEAGHVPSCYFGDVKSKFHLLVKNKGRKDRIIGHFTMSKAISTQKLKHLNS	638

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g0654	638	FunFam	Serine/threonine-protein kinase OXI1	312	380	-	-
	Glsi12g0654	638	CDD	STKc_phototropin_like	224	576	-	-
	Glsi12g0654	638	Gene3D	Transferase(Phosphotransferase) domain 1	453	574	-	-
	Glsi12g0654	638	PANTHER	FLIPPASE KINASE 1-RELATED	72	576	-	-
	Glsi12g0654	638	SUPERFAMILY	Protein kinase-like (PK-like)	213	589	IPR011009	-
	Glsi12g0654	638	MobiDBLite	consensus disorder prediction	42	75	-	-
	Glsi12g0654	638	FunFam	serine/threonine-protein kinase D6PKL2	225	311	-	-
	Glsi12g0654	638	ProSiteProfiles	Protein kinase domain profile.	226	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g0654	638	Pfam	Protein kinase domain	453	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g0654	638	Pfam	Protein kinase domain	228	383	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g0654	638	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	349	361	IPR008271	GO:0004672\|GO:0006468
	Glsi12g0654	638	SMART	serkin_6	226	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g0654	638	Gene3D	Phosphorylase Kinase; domain 1	224	307	-	-
	Glsi12g0654	638	FunFam	serine/threonine-protein kinase D6PK-like	451	574	-	-
	Glsi12g0654	638	Gene3D	Transferase(Phosphotransferase) domain 1	308	380	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g0654	Glsi-ChrGlsi12	22666254	22676017	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g0654	228	566	AGC Kinase Gene Family	AT3G44610	64.972	3.12e-168	486

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Glsi12g0654		Pkinase	2.5e-34	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi12g0654	12	22666254	22676017	Glsi11g1092	11	6914629	6918523	CCT
	Glsi11g1092	11	6914629	6918523	Glsi12g0654	12	22666254	22676017	ECH
	Glsi12g0654	12	22666254	22676017	Glsi12g0654	12	22666254	22676017	ECH