Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0649 ATGGCTAGAAAGAAGTTGAAAAATGAGTACATCACCGATGGAGCTGCAAGAAAAGCATCGTTCAAAGAGAGAAAAGGAGGTATAATGAAGAAGGTGCGCGAACTCAGCACCCATTGCGGGATCGATGCATGCGCTATTGTCTATAGCAATTGTTTGGATCCTCGTCCAGAGATTTGGCCAAACTCACAAGGAGTCCAACGGGTACTAGAGAAGTTCAAAGCTAAGCTGAAGAAGCGAATCGAGGCTCTAATTCGTCGGAAGATCAACAAAGTTAAAGATAAGCTGAAGAAGCGAATCGAGGAGAACCGCGAGAAGGAAATGACCAACCTTATGTTTGGCTACATTGGAGGGGCGACAGAGACAGAGAACGACATGAAGATTGAGGATTTGATTGGTATGAAGAAAGTGGCGGAGAAAAACCTGAAGGAGATCAAGTGGAAGATGGAGGAACTAGATCGGACACGAGTGTATGTTCCAGCTCCTCCTAATTCAGAAGAAATGGTAATCAATAATGGTGAGAATAATGCAAAAATGGTGGATCAAATACTGGAATTTGACATGGAAAATGACATGAATTGGAAGCAATGGTGGAATGAAATTGTGGATTCTCAAGAAATGCTTAAATGTTAA 630 0.4222 MARKKLKNEYITDGAARKASFKERKGGIMKKVRELSTHCGIDACAIVYSNCLDPRPEIWPNSQGVQRVLEKFKAKLKKRIEALIRRKINKVKDKLKKRIEENREKEMTNLMFGYIGGATETENDMKIEDLIGMKKVAEKNLKEIKWKMEELDRTRVYVPAPPNSEEMVINNGENNAKMVDQILEFDMENDMNWKQWWNEIVDSQEMLKC 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0649 209 Coils Coil 85 105 - -
Glsi12g0649 209 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Glsi12g0649 209 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Glsi12g0649 209 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Glsi12g0649 209 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Glsi12g0649 209 PANTHER MADS BOX PROTEIN 3 149 - -
Glsi12g0649 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Glsi12g0649 209 Coils Coil 134 154 - -
Glsi12g0649 209 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0649 Glsi-ChrGlsi12 22612993 22613622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0649 1 151 Type I MADS-box Gene Family AT5G48670 41.772 1.27e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi12g0649 SRF-TF 1.2e-12 No_clan