Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0639 ATGTATTGCAATTTTAAGGATTATGCAGCAGAGTATGTGAAGCAGGCTGTTCATGAGGATGATGCTGGGAACTATAGGAAGGCGTTAACCCTTTATATGAATGCATTAGAGTACTTGAAGACCCATTTGAAGTATGAGAAGAACCCCACGATCAAGGAAGCAATAACCCAGAAATTTGTTCAATACTTGAGGAGGGCAGAGGAGATTCGTGCCATTCTTGATGCTGGAGAAAGGGGGCTTAACTTGCATAGTGGTGGAGCTGCTGCTGTAAGACCAAATACAAAGTCAAGTAGTGGAGAAGGGAGAGATAAGGAGGATCCAGATAAAGCAAAGCTCAAGGCTAGTCTTGATTCTGTGATAATCAGAGAGAAACCAAATGTTAGATGGAGTGATGTTGCTGGACTTGAGAGTGCCAAACAAGCATTACAAGAGGCTGTCATATTGCCTGTTAAGTTCCCTCAATTTTTTACAGGGAAGAGACGACCATGGAGAGCATTTCTATTATATGGTCCACCTGGAACAGGAAAGTCATATTTAGCAAAGGCAGTAGCTACAGAGGCAGACTCGACATTCTTCAGTGTTTCATCGTCAGATCTTGTTTCTAAATGGATGGGTGAAAGTGAAAAGCTAGTTTCCAATCTTTTCCAAATGGCTCGGGACAGTGCTCCTTCGATTATTTTTATTGACGAAATAGATTCTTTATGTGGCCAACGAGGTGAAGGCAATGAGAGTGAAGCATCTCGACGCATCAAAACTGAACTTCTTGTACAAATGCAGGGTATGGGTACTAATGAAGATCAGAAAGTTCTCATTCTTGCAGCCACCAATACACCATATGCTCTGGATCAGGCCATCCGACGACGCTTTGACAAACGAATATACATACCTCTCCCTAACATGAAGGCAAGACAGCACATGTTTAAGGTGCATCTTGGAGATACACCACATAACTTAACTGAAAAAGATTTTGAGGAATTAGCCCGCAAAACTGAAGGATTTTCTGGTTCAGATATTTCTGTTTGTGTTAAGGATGTACTATTTGAACCTGTTCGTAAGACCCAGGATTCTAAATTCTTCAGGAAAACTTCTAATGGAATGTGGGTCCCTTGTGAGCCTGCTCAAAGAGGAGCTGTTAAAGTTACCCTGCAAGAACTCGATGCCCAAGGTCTTGCTTCAGAGATTCTGCCACCACCTATCACAAGAGCAGATTTTGATAAAGTATTAGTGAAGCAGAAGCCAACAGTAAGTAAAGCCGATCTTGAGGTGCATGAGAGGTTCACCCAGGAGTTTGGGGAGGATGGTTGA 1305 0.4245 MYCNFKDYAAEYVKQAVHEDDAGNYRKALTLYMNALEYLKTHLKYEKNPTIKEAITQKFVQYLRRAEEIRAILDAGERGLNLHSGGAAAVRPNTKSSSGEGRDKEDPDKAKLKASLDSVIIREKPNVRWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDSAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGMGTNEDQKVLILAATNTPYALDQAIRRRFDKRIYIPLPNMKARQHMFKVHLGDTPHNLTEKDFEELARKTEGFSGSDISVCVKDVLFEPVRKTQDSKFFRKTSNGMWVPCEPAQRGAVKVTLQELDAQGLASEILPPPITRADFDKVLVKQKPTVSKADLEVHERFTQEFGEDG 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0639 434 FunFam vacuolar protein sorting-associated protein 4A 299 414 - -
Glsi12g0639 434 FunFam Vacuolar protein sorting-associated protein 4 125 306 - -
Glsi12g0639 434 Pfam Vps4 C terminal oligomerisation domain 367 431 IPR015415 -
Glsi12g0639 434 SUPERFAMILY MIT domain 7 83 IPR036181 -
Glsi12g0639 434 Gene3D - 6 75 - -
Glsi12g0639 434 Gene3D - 125 422 IPR027417 -
Glsi12g0639 434 Pfam ATPase family associated with various cellular activities (AAA) 167 297 IPR003959 GO:0005524|GO:0016887
Glsi12g0639 434 ProSitePatterns AAA-protein family signature. 269 288 IPR003960 GO:0005524|GO:0016887
Glsi12g0639 434 CDD RecA-like_VPS4 124 295 - -
Glsi12g0639 434 Gene3D - 299 414 - -
Glsi12g0639 434 SMART smart 2 79 IPR007330 -
Glsi12g0639 434 Pfam MIT (microtubule interacting and transport) domain 9 70 IPR007330 -
Glsi12g0639 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 413 IPR027417 -
Glsi12g0639 434 PANTHER AAA DOMAIN-CONTAINING 23 432 - -
Glsi12g0639 434 MobiDBLite consensus disorder prediction 84 110 - -
Glsi12g0639 434 SMART AAA_5 162 299 IPR003593 GO:0016887
Glsi12g0639 434 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0639 Glsi-ChrGlsi12 22348922 22355617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0639 161 355 Calmodulin-binding Proteins AT3G56690 36.041 3.13e-35 137