Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0638 ATGGAGGTTCTGTCGATTTCACCCACTTTCAACAAATGTAAAACCTTTTCCATTGTCAAAACTCAAAGAACCCCAATTCACCACCTTCCCATAAACCTCAAACTACCCAACTCTTCCAACAGAAGAAGGCATTTCAATCTTTCTTCTTCTTCTTTCAGCTCTTCTATCTGTTTCTGTTCGAGGATAGAGGCAACTTCAGCAACTACATACACCTCCTTCACTTCTTCTACAACTGAGAACCGCCATTGGATAGTAACCATGGAGAAGCCTCCAAAAGGGGTCAATTCGAAGCCAGAAGTAATTGATTATTATGTTAGAACTCTGCAAATAGTTCTTGGCAGTGAGAAAGACGCTCAAATGTGTATATATGATGCTTTTTGGAATACTCACTTCGGTTTTTGTTGTGACATTGATGAAGAAGCTTCCTCCCAGCTCGCCCGTTTACCCGGGGTTGCATCAGTTAAGCCGGATCCAGATTTCAACTCTTTAGAAAAGGATTATAGGTCACCAAATGGGCAGGCAGATGATTTGTCAAAACTACAAACTGGAGCCACTTTCTTGTTTCCTGCAGGGAATTCAAAGCACTGGCTTGTTAGAATGGATAAACCTGGGGTTGGGGTTGTTACAAAGGCCCAAATTGTGGATTATTATGCTCAAATACTGACCAAAGTCATGGGAAACGAGAAGGATGCACAAATGTGTATATACCATGTTTCCTGGAAAACCAACTTTGGCTTTTGTTGTGAACTTGATGAGGATTGTGCACGAGAGCTAGCTGGCGTGCCTGGCATCTTATCAGTTCAGCCAGATAATAATATTGAGTCAGAAAATAAAGATTATGGAGGTAGTAACCTAGAAAACAGTTTGATTGTCCTGAACTCTTCTCAAGCAAGTCAGGAAACTCCCTTAAAAACAAAAAAACTTTTTGTGACAGGCCTATCATTTTATACATCTGAGAAAACCTTACGTGCAGCTTTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATTATGGATAAAATTTCTAAAAGGTCCAAAGGTTATGCATTTGTGGAATACACCACGGAGGAGGCTGCTAGTGCAGCACTGAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTTGTTGATGTTGCCAAGAGTAGCCCACCAAAATACAACCGGGGTCCTGCCAGACCTGTGGTCTGA 1197 0.4127 MEVLSISPTFNKCKTFSIVKTQRTPIHHLPINLKLPNSSNRRRHFNLSSSSFSSSICFCSRIEATSATTYTSFTSSTTENRHWIVTMEKPPKGVNSKPEVIDYYVRTLQIVLGSEKDAQMCIYDAFWNTHFGFCCDIDEEASSQLARLPGVASVKPDPDFNSLEKDYRSPNGQADDLSKLQTGATFLFPAGNSKHWLVRMDKPGVGVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCARELAGVPGILSVQPDNNIESENKDYGGSNLENSLIVLNSSQASQETPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKSSPPKYNRGPARPVV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0638 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 384 IPR000504 GO:0003723
Glsi12g0638 398 SMART rrm1_1 307 380 IPR000504 GO:0003723
Glsi12g0638 398 SUPERFAMILY RNA-binding domain, RBD 294 393 IPR035979 GO:0003676
Glsi12g0638 398 FunFam Organelle RRM domain-containing protein 1, chloroplastic 184 273 - -
Glsi12g0638 398 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 185 375 IPR039206 GO:0016554
Glsi12g0638 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 374 IPR000504 GO:0003723
Glsi12g0638 398 Gene3D - 289 396 IPR012677 -
Glsi12g0638 398 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 189 274 IPR037045 -
Glsi12g0638 398 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 64 161 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0638 Glsi-ChrGlsi12 22321412 22339325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0638 298 397 C2H2 Transcription Factor Family AT2G19380 34.314 2.88e-12 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g0638 12 22321412 22339325 Glsi12g0638 12 22321412 22339325 ECH