Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0617 ATGACAAGAGTGAAGTTGAAACATGAGTACATCACCAATGACGTTAAAAGAAAAGTATCATTCAGGAAAAGGAAGGGAAGCATCATGAAGAAGATGTCTGAACTCAGCATCCTTTGTGGTGTTGAGGCTGGTGCTATTGTTTATAGTGGCCCCTCTGATCCCCAGCCAGAGGTTTGGCCAAATCCAGGAGGAATCCAGCAAGTGATTGAGAGGTATCAAGCTAAGCCGGACCAGGAGAAGTCCCTGACCCAAGAGGGCTTAATCCAGCAGCGGATTAACAAAGCCAAAGAAGATCTGAAGAAGTGGTCTAAGGAGAACTGCGAGGAGGAGAAGAACCTGCTCATGTTAGGCTGTATTGGAGGGCAAACAATGCAGAACATGCCTGCCGAGGATTTCATTGAAATGAATAGGTCCATTGACCAGAGTTTGAGGGACATTAACAGGAAGACAGAGGCACTTGACAGAGAGATGGGAGTCTATATTCCAAGTCCTCCAACGTCAGATGGCTTGCTAGTCAATGGAGAGAATGAAAAGCTGGTGGATCAAATTCTGCAGTTTGGCATGGACTCTGACAACTTGAATAAGCAGCAATGGTGGACTGACATGGTGAATTTTGAGGACTATATGGGCTTTGGTGCAGATGAGATGCTGCTGCCTTTTAACTACCATAATGCTTCTTCATCGAACAACCCTTGA 696 0.4555 MTRVKLKHEYITNDVKRKVSFRKRKGSIMKKMSELSILCGVEAGAIVYSGPSDPQPEVWPNPGGIQQVIERYQAKPDQEKSLTQEGLIQQRINKAKEDLKKWSKENCEEEKNLLMLGCIGGQTMQNMPAEDFIEMNRSIDQSLRDINRKTEALDREMGVYIPSPPTSDGLLVNGENEKLVDQILQFGMDSDNLNKQQWWTDMVNFEDYMGFGADEMLLPFNYHNASSSNNP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0617 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Glsi12g0617 231 CDD MADS_SRF_like 2 72 IPR033897 GO:0000981|GO:0000987|GO:0045944
Glsi12g0617 231 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Glsi12g0617 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Glsi12g0617 231 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Glsi12g0617 231 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Glsi12g0617 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi12g0617 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi12g0617 231 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0617 Glsi-ChrGlsi12 22073356 22074051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0617 1 153 Type I MADS-box Gene Family AT5G48670 44.586 1.34e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi12g0617 SRF-TF 1.1e-15 No_clan