Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0606 ATGTCTTGCCGTCAGTACTCGACTCGACTCAAGCAGGTGAAATCATATGGCGGGAAATTGAAGAGCTCTTTACCAAGTGCGCTTATTCTAGAGTCGCCGAATACTGGAGAAGACACTGAAACAAGGAGCACAATGGGCTCAGAAGCTCTCCTTCTTCCAAAATGGGCATCCAAGGCTTGCATCATGGGAATCGACGAAGCTGGCCGAGGACCCGTTTTAGGACCCATGGTGTACGGATGCTTGTACTGTGCTCGCTCGTATCAGAAGACCCTTGCAACTTTGAGTTTTGCTGATTCTAAGACACTAAAAGAAGAGAAGAGGGAAGAATTATTTGAAAATTTGAAGGGAAATGAATCAATTGGATGGGCTGTAGATGTCTTGGACCCAAGGGAACTCTCAGCTAAAATGCTGAAGAGGAATAAGATAAACCTGAATGAGATATCACATCACTCTGCCATGGGCCTGGTTGATAGGGTACTGAAGATGGGAGTTCTTTTAACTGAGGTCTATATAGATACAGTTGGAGATCCAGAGAAATATGAAATGAAGCTGTCTAACAATTTTCCATCTATCAAATTTGTGGTTGCCAAGAAGGCCGATAGTCTTTATCCAGTTGTGAGTGGAGCAAGCATAGTTGCAAAGGTCACAAGAGACCGAGCTTTGCGGGAATGGGTGCTTGATGAGACTGCTGAAAACATGCATAGGAACTTTGGCTCTGGATATCCTGGAGATCCCCAAACCAAGTCCTGGCTAGAACATCACAAACATTCTGTCTTTGGATTTCCAACATTGGTCCGATTCAGTTGGGGAACCTGCACTACATATTTTAAAGATATTGTGGAAGTCTTATGGGAATCTGATAAAATGGATGAAGATGGTAGAAGTGGTAGTAACAATGGCAAGCGGCAGTTGAAATTAAGCAATGTAGGTTTCACCACATCCAAGAGGAGAAGTGAAGAAATAGAATCAAGTGGCAAAGGTCGCAGCAGGTTTTTCGAGGCTCGGAAACTTGAGCATCTTACTAATTTCTAA 1032 0.4351 MSCRQYSTRLKQVKSYGGKLKSSLPSALILESPNTGEDTETRSTMGSEALLLPKWASKACIMGIDEAGRGPVLGPMVYGCLYCARSYQKTLATLSFADSKTLKEEKREELFENLKGNESIGWAVDVLDPRELSAKMLKRNKINLNEISHHSAMGLVDRVLKMGVLLTEVYIDTVGDPEKYEMKLSNNFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWVLDETAENMHRNFGSGYPGDPQTKSWLEHHKHSVFGFPTLVRFSWGTCTTYFKDIVEVLWESDKMDEDGRSGSNNGKRQLKLSNVGFTTSKRRSEEIESSGKGRSRFFEARKLEHLTNF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0606 343 PANTHER RIBONUCLEASE H2 SUBUNIT A 51 330 IPR001352 GO:0003723|GO:0004523
Glsi12g0606 343 FunFam Ribonuclease 37 231 - -
Glsi12g0606 343 Gene3D - 34 231 IPR036397 GO:0003676
Glsi12g0606 343 MobiDBLite consensus disorder prediction 299 314 - -
Glsi12g0606 343 MobiDBLite consensus disorder prediction 290 326 - -
Glsi12g0606 343 NCBIfam ribonuclease HII 61 274 IPR004649 GO:0004523|GO:0016070
Glsi12g0606 343 Gene3D Ribonuclease hii. Domain 2 232 278 IPR023160 GO:0004523
Glsi12g0606 343 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 59 281 IPR024567 GO:0004523
Glsi12g0606 343 SUPERFAMILY Ribonuclease H-like 60 277 IPR012337 -
Glsi12g0606 343 Pfam Ribonuclease HII 62 272 IPR024567 GO:0004523
Glsi12g0606 343 CDD RNase_HII_eukaryota_like 62 278 - -
Glsi12g0606 343 FunFam Ribonuclease 233 279 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0606 51 343 Core DNA Replication Machinery Family AT2G25100 67.577 5.32e-148 416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g0606 12 21887852 21898161 Glsi12g0606 12 21887852 21898161 ECH