Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0603 ATGCGAAATCTCCTAGAAAGCGAGTTTCTCAGTTATAGCGAAAAGAGAAAACAACCAACTGTACATAGTACCCCATTTGAATTCAACTGGAAAACGACAAGAGAGATGTTTCAAGACTCCTCCGCCGCTGCCGTACCGTCGTTGCCGAGTCAGACTCAGTGGACTCGCGAGCTGGATAAGCTCTTCGAGCGGGCTATCTACGCGGTGCCGGAGAACACGCCGAACCGGTGGGAGAGGGTTGCGGAGTGCGTTCCTGGGAAGACGGCGGATGAGGTCAGGGAGCGATACGAGGACTTGCTTCGCGACCTGGCGGCGATTGAATCGGGTCGGGTCGAGATTCCGGTTTACCCCGAAGACATGGCTGCGGCAGCGAGCGCGTCGGAGGGAAGTTTGTCCGGTTGGGACTCGGCAGAACAGATCTCCTTCGGTTCGAAGAACAAACATGGTGGCGATACCGAGAGAAAGAAGGGCACCCCTTGGACAGAGGATGAACACAAGCGATTCCTCAAGGGACTGCGCGAGTATGGCAAGGGAGATTGGAGGAGCATCTCAAGAAATGTGGTGATTACAAGAACACCAACTCAAGTAGCTAGCCATGCCCAGAAGTATTTCCTTCGCCAGAATGCTGCGAAGAAAGAGAGGAAGAGGTCCAGCATCCATGACATAACCACAGTGGACAGCAACCCAGTCTCCGTGCCGATGGATCAGGGCTGGATTGCTCCTCCTCCTCCTCCTCCTCCCAGTTTTCCGGCACAGCAGTCACAGGAAATGCATCAGTTTAACCCGCAAAACCACTTTCACGATCAGTTTAGCCCACAAAAGTTTCATGATCAGGAAATGCATCAGTTTAACCCACAAAACAACTTTCATGATCATCATCAAAAGGGCGGGTTTGGGTACCCAAACTACTGCTTTAGAAGGTAG 924 0.5238 MRNLLESEFLSYSEKRKQPTVHSTPFEFNWKTTREMFQDSSAAAVPSLPSQTQWTRELDKLFERAIYAVPENTPNRWERVAECVPGKTADEVRERYEDLLRDLAAIESGRVEIPVYPEDMAAAASASEGSLSGWDSAEQISFGSKNKHGGDTERKKGTPWTEDEHKRFLKGLREYGKGDWRSISRNVVITRTPTQVASHAQKYFLRQNAAKKERKRSSIHDITTVDSNPVSVPMDQGWIAPPPPPPPSFPAQQSQEMHQFNPQNHFHDQFSPQKFHDQEMHQFNPQNNFHDHHQKGGFGYPNYCFRR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0603 307 CDD SANT 54 100 IPR001005 -
Glsi12g0603 307 Pfam Myb-like DNA-binding domain 53 100 IPR001005 -
Glsi12g0603 307 Pfam Myb-like DNA-binding domain 159 204 IPR001005 -
Glsi12g0603 307 Coils Coil 89 109 - -
Glsi12g0603 307 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 51 288 IPR043363 -
Glsi12g0603 307 ProSiteProfiles Myb-like domain profile. 152 204 IPR001005 -
Glsi12g0603 307 Gene3D - 158 209 - -
Glsi12g0603 307 MobiDBLite consensus disorder prediction 208 231 - -
Glsi12g0603 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 104 IPR017930 -
Glsi12g0603 307 FunFam Transcription factor SRM1 47 113 - -
Glsi12g0603 307 FunFam transcription factor MYB1R1 158 209 - -
Glsi12g0603 307 SUPERFAMILY Homeodomain-like 153 208 IPR009057 -
Glsi12g0603 307 MobiDBLite consensus disorder prediction 147 162 - -
Glsi12g0603 307 ProSiteProfiles Myb-like domain profile. 54 100 IPR001005 -
Glsi12g0603 307 CDD SANT 159 204 IPR001005 -
Glsi12g0603 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 208 IPR017930 -
Glsi12g0603 307 ProSiteProfiles SANT domain profile. 155 208 IPR017884 -
Glsi12g0603 307 SMART sant 50 102 IPR001005 -
Glsi12g0603 307 SMART sant 156 206 IPR001005 -
Glsi12g0603 307 MobiDBLite consensus disorder prediction 140 162 - -
Glsi12g0603 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 155 207 IPR006447 GO:0003677
Glsi12g0603 307 Gene3D - 49 113 - -
Glsi12g0603 307 SUPERFAMILY Homeodomain-like 49 102 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0603 Glsi-ChrGlsi12 21732880 21735103 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi12g0603 Myb_DNA-binding 9.9e-08 CL0123