Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0574 ATGAACAACACCACCATACACTCAAGCCACAACCACGTTCCATCTGTTCATGGATTCACCTACGGCATCGCTTTCACCATTGGAATGCTCATCCTCGTCGTGGTCATCCTCCTTGCTTGTGTCAAGCTTCGTCTTCCTCTAAACTTAGTCCAATTAGGTTGGCGAGGCCAACCTAATACAACAGCTTCGGTGCAGCCCTTTGTGGTGGAAGTCACTGAACAAAGAGGCATTGACGATGATACTCTTCAAAGTTACCCGAAGGTTCTTTACTCTGAAGTAGTGCAAGAGGGTGGAGGCTTAGTTTCCTGCTCAGTTTGCTTGGATGATTATAAGGAAGATGATGTGCTGCGAATGCTGCCAGATTGTGGCCATCTTTTTCACCTCAGCTGCATTGATTCGTGGCTTAAGTCGCACCCCACCTGTCCGATTTGTCGGAGCTCACCGGCTCCGGGTTCACAATCAACCGGAGTTGTCACGGTGGAGGAGGAGCACGTAGCTATCCCCGTTGAATAG 513 0.4951 MNNTTIHSSHNHVPSVHGFTYGIAFTIGMLILVVVILLACVKLRLPLNLVQLGWRGQPNTTASVQPFVVEVTEQRGIDDDTLQSYPKVLYSEVVQEGGGLVSCSVCLDDYKEDDVLRMLPDCGHLFHLSCIDSWLKSHPTCPICRSSPAPGSQSTGVVTVEEEHVAIPVE 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0574 170 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 155 IPR045899 -
Glsi12g0574 170 CDD RING-H2_EL5-like 102 145 - -
Glsi12g0574 170 SMART ring_2 103 144 IPR001841 -
Glsi12g0574 170 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Glsi12g0574 170 FunFam E3 ubiquitin-protein ligase ATL6 67 150 - -
Glsi12g0574 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 150 IPR013083 -
Glsi12g0574 170 SUPERFAMILY RING/U-box 81 148 - -
Glsi12g0574 170 Pfam Ring finger domain 102 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0574 Glsi-ChrGlsi12 20929746 20930258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0574 16 160 C3H Transcription Factor Family AT2G35910 44.295 3.89e-31 110