Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0573 ATGAATAACAGCACCAACAGCAACTATACATCTCATGGAGCTGCTGGGTTCAACTACGTCTTCACCTTGGTTTTTGGCTTGATCTTCTTATCTTTAGCCATAGCTTTTTCTTGTGTTCGTCTTCGTAGGTCTTCGTACCCCTCTGTGTTTAACATGCTGGCTGGTACTGTTCCTTTCCCTTCCGCCAACGTTGAGGTCACAGAACAAGGACTCGATGATAGCACCCTCCACAGCTTCCCAAAGCTACTCTACTCTCAGGCGCCTAAGGGCACTTCAGTTCCTTCTTCATGCTCCATCTGCTTAGGGGATTATAAGGAAACTGATACATTGAGGTTGCTTCCTGATTGTGGCCATCTCTACCATCTCAACTGCATTGATCCATGGCTCAAGTTGCACCCCACGTGCCCCATATGTCGAAAATCTCCCCAGTCAAATAGCTCCATGGATGAAATAGTTTGA 459 0.4662 MNNSTNSNYTSHGAAGFNYVFTLVFGLIFLSLAIAFSCVRLRRSSYPSVFNMLAGTVPFPSANVEVTEQGLDDSTLHSFPKLLYSQAPKGTSVPSSCSICLGDYKETDTLRLLPDCGHLYHLNCIDPWLKLHPTCPICRKSPQSNSSMDEIV 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0573 152 SMART ring_2 97 138 IPR001841 -
Glsi12g0573 152 Pfam Ring finger domain 96 139 IPR001841 -
Glsi12g0573 152 CDD RING-H2_EL5-like 96 139 - -
Glsi12g0573 152 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 145 IPR045899 -
Glsi12g0573 152 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Glsi12g0573 152 SUPERFAMILY RING/U-box 96 142 - -
Glsi12g0573 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 144 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0573 Glsi-ChrGlsi12 20911808 20913140 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0573 15 142 C3H Transcription Factor Family AT2G35910 45.455 1.07e-29 105