Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0570 ATGGGTGGTGGTGTTGAATATAGCGCAGTTGTGTTCTTCTGCCTAATCATTCTAATAACCATTATTCTTACATTAGCATCCTATTTTTGCAGTAAACAGGCCAACCCAGCTACGCATTCTGATGGGATTGATAACAGTACTAATGTCTCGGACTCAAACCAAAGGACAGTGATAATAGGGGAGCCATGCCAAGATGAAACTAGGGTTAGCAGCGTCAAAGCCAATTTCTGTAAGAGCAGTAGTTCATCTTCAAGTTCTTCTTGCTGCTCCATATGCTTGATGGATTACAAAGAATCTGACCTATTGCGAGTGCTTCCAGATTGCGGACATTTCTTCCATGTCAAGTGCATTGATCCTTGGTTCACCATGAATTTGACTTGCCCTATTTGTAGAAGGTCTTTCGTTTAA 408 0.4142 MGGGVEYSAVVFFCLIILITIILTLASYFCSKQANPATHSDGIDNSTNVSDSNQRTVIIGEPCQDETRVSSVKANFCKSSSSSSSSSCCSICLMDYKESDLLRVLPDCGHFFHVKCIDPWFTMNLTCPICRRSFV 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0570 135 SMART ring_2 89 130 IPR001841 -
Glsi12g0570 135 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 133 IPR045899 -
Glsi12g0570 135 Pfam Ring finger domain 89 131 IPR001841 -
Glsi12g0570 135 CDD RING-H2_PA-TM-RING 91 131 - -
Glsi12g0570 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 135 IPR013083 -
Glsi12g0570 135 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Glsi12g0570 135 SUPERFAMILY RING/U-box 88 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0570 Glsi-ChrGlsi12 20772325 20772732 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0570 3 133 C3H Transcription Factor Family AT5G06490 35.065 3.53e-23 88.2