Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0555 ATGGCTGTGTCTTCTGCTTCTTATTTCATTCCTTTGGTCTTCTTGTCGATGGCTCTCTTCTCCCTCCGAGCCATGGCTGGCTCTATTGATGGTAGTTGGTATGATGCTCGTGCTACCTTCTATGGTGACATGAAAGGTGGAGAAACCATGCAGGGGGCTTGTGGCTATGGAGATCTCTTCAAGCAAGGGTACGGCCTTGCGACCGCCGCACTAAGCACAGCTCTCTTCAACAACGGCCTTACCTGCGGTGCCTGCTTTGAGATCATGTGCGTCAACGACCCACAATGGTGCATCAAAGGTGCCGGCACCATAAAAATCACCGCGACCAATTTTTGTCCTCCGAACCATGACCAACCTGATATCAACCATTGGTGCAACCCTCCACAAAAGCACTTCGATTTGTCCATGGCCATGTTCACCAGGATAGCTTTCTACAAAGCCGGGGTCATCCCAGTTCGCTATCGCCGCATTCCGTGTGCCAAATCTGGCGGGGTCAAGTTCGAGCTCAAGGGGAACCCATCCTGGTTGCTGGTGTTGTTCTACAACGTTGCCAATGCTGGTGATGTTTCTAGTGCTATGATCAAAGGGTCCAATGGTGGGTGGGTTCAGATGACCAGGAATTGGGGTCAGAATTGGCAAATTGGGACTAACCTTGTTGGGCAAAGCTTGTCTTTCCAAGTGACTACAAGTGATGGGAAAATGTTGCAGTTTGATAATGTTGTCCCTTCTAATTGGCAGTTCGGACAGACATTCGAGGCCAAACAAAACTTTTAG 774 0.4961 MAVSSASYFIPLVFLSMALFSLRAMAGSIDGSWYDARATFYGDMKGGETMQGACGYGDLFKQGYGLATAALSTALFNNGLTCGACFEIMCVNDPQWCIKGAGTIKITATNFCPPNHDQPDINHWCNPPQKHFDLSMAMFTRIAFYKAGVIPVRYRRIPCAKSGGVKFELKGNPSWLLVLFYNVANAGDVSSAMIKGSNGGWVQMTRNWGQNWQIGTNLVGQSLSFQVTTSDGKMLQFDNVVPSNWQFGQTFEAKQNF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0555 257 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Glsi12g0555 257 CDD DPBB_EXPA_N 33 159 - -
Glsi12g0555 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 164 IPR007112 -
Glsi12g0555 257 PANTHER EXPANSIN-A15 13 255 IPR002963 GO:0009664
Glsi12g0555 257 Pfam Lytic transglycolase 68 154 IPR009009 -
Glsi12g0555 257 Gene3D - 20 160 IPR036908 -
Glsi12g0555 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Glsi12g0555 257 SMART dpbb_1 68 154 IPR007112 -
Glsi12g0555 257 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Glsi12g0555 257 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Glsi12g0555 257 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Glsi12g0555 257 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Glsi12g0555 257 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Glsi12g0555 257 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Glsi12g0555 257 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Glsi12g0555 257 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Glsi12g0555 257 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Glsi12g0555 257 SUPERFAMILY PHL pollen allergen 161 252 IPR036749 -
Glsi12g0555 257 SUPERFAMILY Barwin-like endoglucanases 32 182 IPR036908 -
Glsi12g0555 257 Gene3D - 164 257 IPR036749 -
Glsi12g0555 257 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Glsi12g0555 257 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Glsi12g0555 257 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Glsi12g0555 257 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Glsi12g0555 257 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Glsi12g0555 257 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0555 Glsi-ChrGlsi12 20226799 20228684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0555 29 257 Expansin Gene Family AT5G39300 68.122 5.35e-119 339