Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0552 ATGGGGTTCTTATCCGCAAGGGACGGTGAAAATGGTGATGTGGGTCAATGGAATATAAGGAAGCACAACAAGATCCAAGTGGTCCAGGGTGAAGTGGGAGTGGGTAAGGGCTTTATTGATGCAACACAACGTAGAAATATTGGAAGATTTATAAATCATAGCCGTTCTCCTAATAATGTTATGTACGATCATGATGATAAGAGATTCCCTCACAAAATGCTATTTGCTCTCAAGAACATACCAGACCAGCTGGAAGAGACCCCTAGTCTTTATCTTTACAATTTGGGTTGA 291 0.4124 MGFLSARDGENGDVGQWNIRKHNKIQVVQGEVGVGKGFIDATQRRNIGRFINHSRSPNNVMYDHDDKRFPHKMLFALKNIPDQLEETPSLYLYNLG 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0552 96 Pfam SET domain 45 81 IPR001214 GO:0005515
Glsi12g0552 96 SUPERFAMILY SET domain 34 81 IPR046341 -
Glsi12g0552 96 Gene3D SET domain 7 87 IPR046341 -
Glsi12g0552 96 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 13 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0552 Glsi-ChrGlsi12 20192926 20197843 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi12g0552 SET 5.9e-06 No_clan