Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0550 ATGGCCACCAAACTAAACATCTTTTTGGCCTTTTCCGTGGCGATTCTCCTCGCAGCAACCGCTGTATTCTCAGCTGACGATGCGCCGATTCCTTCAGAAAAGTCCCAATTGGCCACATGGTTTAATGAGAACGTGAAGCCATTGGCAGATAGAAAGAGCACCCTTGACCCTGCACTTGTGGCTGCAGAAGAAGGTGCTAAGGTTGTGAAGGTGATGAAAGATGGGACAGGGGACTTTAAGACCATCACTGAAGCCATTAATAGCATCCCAGCTGAGAACACAAAGCGTGTGATAGTATACATTGGAGCAGGAACTTATGAAGAGAAAATCAAAATTGATAGGAACAAGCCTTTTGTGACTTTGTTTGGGGAACCTGGGAATAACCCAAACTTGACCTTTGCAGGCACTGCAAAACAATATGGCACTGTTGATAGTGCTACCTTAATTGCTGAATCAAATTACTTTGTGGCTGCTAATCTCATTATTTCGAATTCAGCTCCAATGCCAGACGGGCGGGCAGAGGGAGCTCAAGCAGTGGCAGCGAGGATTTCTGGTGACTTTACGGCACTGTACAGTTGCACATTGTTAGGGTTTCAGGATACCCTATGTGATGATAGCGGTAATCATTTGTTCAAAGATTGCACAATTCAAGGCACTGTGGATTTCATTTTTGGAAGTGGAAAATCACTATATTTGGACACTAAGTTGATTGTAGTTGGGGAAGCAGGAGGAGTGATAACTGCACAAGCCAGAAAGAATGAAGGAGAGGACATTGGGTACTCATTTGTTCATTGTGATATTAGTGGGACTGCTAATGGCACTTGGTTGGGCAGAGCATGGATGCCACATGCCAAAGTTGTCTTCGCTTACACCTCAATGAGCAAGATTGTGAATCCACTTGGCTGGAACGAAAACAATCATCCTAATAATGCTCAGACTGTATTTTTTGGAGAGTACAAGAACACTGGAGATAGTGGAAGTCCAGAGGGACGTGTGAGCTTCACAAAGCAGCTCACTGAGGCTGACGTTAAACCTTTCCTCTCTCTTGCATTTATTGAGGCTTCCAAATGGCTGCTTCCTCCTCCAACTCCTGAAGTTTAA 1101 0.4469 MATKLNIFLAFSVAILLAATAVFSADDAPIPSEKSQLATWFNENVKPLADRKSTLDPALVAAEEGAKVVKVMKDGTGDFKTITEAINSIPAENTKRVIVYIGAGTYEEKIKIDRNKPFVTLFGEPGNNPNLTFAGTAKQYGTVDSATLIAESNYFVAANLIISNSAPMPDGRAEGAQAVAARISGDFTALYSCTLLGFQDTLCDDSGNHLFKDCTIQGTVDFIFGSGKSLYLDTKLIVVGEAGGVITAQARKNEGEDIGYSFVHCDISGTANGTWLGRAWMPHAKVVFAYTSMSKIVNPLGWNENNHPNNAQTVFFGEYKNTGDSGSPEGRVSFTKQLTEADVKPFLSLAFIEASKWLLPPPTPEV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0550 366 Pfam Pectinesterase 69 354 IPR000070 GO:0030599|GO:0042545
Glsi12g0550 366 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 61 358 - -
Glsi12g0550 366 SUPERFAMILY Pectin lyase-like 66 360 IPR011050 -
Glsi12g0550 366 FunFam Pectinesterase 64 360 - -
Glsi12g0550 366 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Glsi12g0550 366 Gene3D - 64 361 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0550 Glsi-ChrGlsi12 20157952 20161112 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0550 6 362 Carbohydrate Esterase AT1G69940 54.342 2.17e-146 416