Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0548 ATGACCACCAAACTTATAAACTTTTCCGCCATTCAGGTGGCTGTCATGACGGTTTTCCTCACAGCTACCGCTGTCTTCTCATCTGACAATGCGCTGATTCCTGCAGAAAAGTCCCAACTGGGCAAATGGTTCAATGAGAACGTGAAGCCAATGGCATATAGAAAGAGCACCCTTGACCCTGCACTTGTGGCTGCAGAAGAAGGTGCTAAGGTTGTGAAGGTGATGAAAAATGGGAAAGGGGACTTCAAGACCATCACTGAAGCCATTAATAGCATCCCAGTTGGGAACACAAAGCGTGTGATAGTGTACATTGGAGCAGGAACTTATCAAGAGAAAATAAAAATTGATAGGAATAAGCCTTTTGTGACTTTGTTTGGGGAACCTGGGAATAACCCAAACTTGACCTTTGGAGGCACTGCAAAACAATATGGCACCGTTGATAGTGCTACCTTGATTGCTGAATCAAATTACTTTGTGGCTGCTAATCTCGTTATTTCGAATTCAGCTCCAATGCCAGACGGGCGTGCAGAGGGAGCTCAAGCAGTGGCAGCAAGGATTTCGGGTGACTTTTCGGCGATGTACAATTGCAAATTGTTAGGGTTTCAGGATACACTATGTGATGACAGGGGCAATCATTTGTTCAAAGATTGCACAATTCAAGGCACTGTGGATTTCATTTTTGGAAGTGGAAAATCACTATTTTTAGACACTAAGTTGATTGTAGTTGGGGCAATGGGAGGAGTGATAACTGCACAAGCCAGAAAGAATGAAGGAGAGGACATTGGGTACTCATTTGTGCATTGTGATATTAGTGGGACTGCTAATGGCACTTGGTTGGGCAGAGCATGGATGCCACATGCCAAAGTAGTCTTTGCTTATACCTCAATGAGCAAGATTGTGAATCCTCTTGGTTGGAACGAAAACAATCATCCAAATAATGCCAAGACTGTATTTTTTGGAGAGTACAAGAACAGCGGAGAAAGGGGAACTCCAAAGGGACGTGTGGGCTTCACAAAGCAATTAAGTGATTCAGCTGCCAAGCCTTTCCTCTCTCTAGGCTTTATTGAGGGTTCCAAGTGGCTGCTTCCTCCGCCAACTCCTAAAGTCTAA 1110 0.4432 MTTKLINFSAIQVAVMTVFLTATAVFSSDNALIPAEKSQLGKWFNENVKPMAYRKSTLDPALVAAEEGAKVVKVMKNGKGDFKTITEAINSIPVGNTKRVIVYIGAGTYQEKIKIDRNKPFVTLFGEPGNNPNLTFGGTAKQYGTVDSATLIAESNYFVAANLVISNSAPMPDGRAEGAQAVAARISGDFSAMYNCKLLGFQDTLCDDRGNHLFKDCTIQGTVDFIFGSGKSLFLDTKLIVVGAMGGVITAQARKNEGEDIGYSFVHCDISGTANGTWLGRAWMPHAKVVFAYTSMSKIVNPLGWNENNHPNNAKTVFFGEYKNSGERGTPKGRVGFTKQLSDSAAKPFLSLGFIEGSKWLLPPPTPKV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0548 369 Pfam Pectinesterase 72 357 IPR000070 GO:0030599|GO:0042545
Glsi12g0548 369 Gene3D - 67 364 IPR012334 -
Glsi12g0548 369 ProSitePatterns Pectinesterase signature 2. 219 228 IPR033131 -
Glsi12g0548 369 FunFam Pectinesterase 67 363 - -
Glsi12g0548 369 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 64 361 - -
Glsi12g0548 369 SUPERFAMILY Pectin lyase-like 69 363 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0548 Glsi-ChrGlsi12 20098338 20102082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0548 10 365 Carbohydrate Esterase AT1G69940 56.742 4.42e-148 421